Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CCDC42Q96M95 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC42Q96M95 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC42Q96M95 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CCDC42Q96M95 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC42Q96M95 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC42Q96M95 PNMA6B-201ENST00000538162 1200 ntBASIC20.54■□□□□ 0.88
CCDC42Q96M95 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC42Q96M95 MIR4758-201ENST00000577688 71 ntBASIC20.54■□□□□ 0.88
CCDC42Q96M95 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC42Q96M95 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC42Q96M95 AL121829.2-201ENST00000620908 328 ntBASIC20.54■□□□□ 0.88
CCDC42Q96M95 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CCDC42Q96M95 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC42Q96M95 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC42Q96M95 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC42Q96M95 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC42Q96M95 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CCDC42Q96M95 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC42Q96M95 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
CCDC42Q96M95 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC42Q96M95 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC42Q96M95 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC42Q96M95 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC42Q96M95 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC42Q96M95 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC42Q96M95 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC42Q96M95 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC42Q96M95 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.53■□□□□ 0.88
CCDC42Q96M95 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.53■□□□□ 0.88
CCDC42Q96M95 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC42Q96M95 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC42Q96M95 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.53■□□□□ 0.88
CCDC42Q96M95 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC42Q96M95 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
CCDC42Q96M95 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 AC018470.1-201ENST00000624790 3129 ntBASIC20.53■□□□□ 0.88
CCDC42Q96M95 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CCDC42Q96M95 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CCDC42Q96M95 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CCDC42Q96M95 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC42Q96M95 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
CCDC42Q96M95 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC42Q96M95 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC42Q96M95 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC42Q96M95 BICD1-207ENST00000551848 1962 ntBASIC20.52■□□□□ 0.88
CCDC42Q96M95 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CCDC42Q96M95 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC42Q96M95 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC42Q96M95 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC42Q96M95 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CCDC42Q96M95 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC42Q96M95 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC42Q96M95 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC42Q96M95 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC42Q96M95 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CCDC42Q96M95 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CCDC42Q96M95 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC42Q96M95 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.52■□□□□ 0.88
CCDC42Q96M95 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC42Q96M95 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.52■□□□□ 0.88
CCDC42Q96M95 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC42Q96M95 AC060766.5-201ENST00000590539 871 ntBASIC20.52■□□□□ 0.88
CCDC42Q96M95 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.52■□□□□ 0.88
CCDC42Q96M95 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.52■□□□□ 0.88
CCDC42Q96M95 MYC-209ENST00000641252 345 ntBASIC20.52■□□□□ 0.88
CCDC42Q96M95 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC42Q96M95 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC42Q96M95 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC42Q96M95 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC42Q96M95 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC42Q96M95 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC42Q96M95 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC42Q96M95 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC42Q96M95 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC42Q96M95 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC42Q96M95 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC42Q96M95 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC42Q96M95 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CCDC42Q96M95 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CCDC42Q96M95 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
CCDC42Q96M95 ANO7L1-203ENST00000602586 1720 ntBASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms