Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 PRSS44-201ENST00000515154 1146 ntBASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 AC233702.5-201ENST00000584107 538 ntBASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 MIR6786-201ENST00000616843 113 ntBASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 FSCN1P1-201ENST00000568912 1481 ntBASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 AC006333.2-201ENST00000607957 2099 ntBASIC21.13■□□□□ 0.97
CCDC65Q8IXS2 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 B3GAT3P1-201ENST00000471720 806 ntBASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 AC011506.1-201ENST00000474329 610 ntBASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 AC130371.2-201ENST00000619443 611 ntBASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 AL049637.2-201ENST00000641778 930 ntBASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CCDC65Q8IXS2 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 AC113410.3-201ENST00000623366 203 ntBASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC65Q8IXS2 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 FAM207BP-201ENST00000447172 505 ntBASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 AC008040.2-201ENST00000461049 708 ntBASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 Z99916.2-201ENST00000604037 246 ntBASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC65Q8IXS2 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms