Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP54Q70EL1 GAD2-202ENST00000376248 680 ntTSL 5 BASIC25.41■■□□□ 1.66
USP54Q70EL1 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC25.41■■□□□ 1.66
USP54Q70EL1 PP7080-204ENST00000510714 601 ntTSL 3 BASIC25.41■■□□□ 1.66
USP54Q70EL1 AC111152.3-201ENST00000569699 673 ntBASIC25.41■■□□□ 1.66
USP54Q70EL1 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC25.41■■□□□ 1.66
USP54Q70EL1 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP54Q70EL1 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC25.41■■□□□ 1.66
USP54Q70EL1 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC25.41■■□□□ 1.66
USP54Q70EL1 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP54Q70EL1 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
USP54Q70EL1 LINC01006-201ENST00000333319 2292 ntBASIC25.4■■□□□ 1.66
USP54Q70EL1 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC25.4■■□□□ 1.66
USP54Q70EL1 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP54Q70EL1 SKP2-204ENST00000508514 821 ntTSL 3 BASIC25.4■■□□□ 1.66
USP54Q70EL1 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC25.4■■□□□ 1.66
USP54Q70EL1 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP54Q70EL1 KRT8P26-201ENST00000534154 1276 ntBASIC25.4■■□□□ 1.66
USP54Q70EL1 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC25.4■■□□□ 1.66
USP54Q70EL1 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC25.4■■□□□ 1.66
USP54Q70EL1 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
USP54Q70EL1 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP54Q70EL1 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC25.4■■□□□ 1.66
USP54Q70EL1 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC25.4■■□□□ 1.66
USP54Q70EL1 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
USP54Q70EL1 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
USP54Q70EL1 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP54Q70EL1 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP54Q70EL1 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP54Q70EL1 MIR662-201ENST00000384847 95 ntBASIC25.39■■□□□ 1.66
USP54Q70EL1 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC25.39■■□□□ 1.66
USP54Q70EL1 BX276092.5-203ENST00000456199 560 ntBASIC25.39■■□□□ 1.66
USP54Q70EL1 CIB2-208ENST00000560618 804 ntTSL 2 BASIC25.39■■□□□ 1.66
USP54Q70EL1 AC112497.1-201ENST00000624824 639 ntBASIC25.39■■□□□ 1.66
USP54Q70EL1 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC25.39■■□□□ 1.66
USP54Q70EL1 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP54Q70EL1 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP54Q70EL1 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.66
USP54Q70EL1 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP54Q70EL1 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
USP54Q70EL1 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC25.39■■□□□ 1.65
USP54Q70EL1 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.65
USP54Q70EL1 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC25.39■■□□□ 1.65
USP54Q70EL1 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
USP54Q70EL1 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC25.39■■□□□ 1.65
USP54Q70EL1 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
USP54Q70EL1 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC25.39■■□□□ 1.65
USP54Q70EL1 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC25.39■■□□□ 1.65
USP54Q70EL1 SDHD-206ENST00000528182 754 ntTSL 3 BASIC25.39■■□□□ 1.65
USP54Q70EL1 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC25.39■■□□□ 1.65
USP54Q70EL1 AC012615.1-201ENST00000565797 1299 ntBASIC25.39■■□□□ 1.65
USP54Q70EL1 RNF126P1-202ENST00000569893 925 ntBASIC25.39■■□□□ 1.65
USP54Q70EL1 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC25.39■■□□□ 1.65
USP54Q70EL1 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
USP54Q70EL1 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP54Q70EL1 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP54Q70EL1 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC25.38■■□□□ 1.65
USP54Q70EL1 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC25.38■■□□□ 1.65
USP54Q70EL1 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP54Q70EL1 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC25.38■■□□□ 1.65
USP54Q70EL1 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP54Q70EL1 DRAXINP1-201ENST00000437611 948 ntBASIC25.38■■□□□ 1.65
USP54Q70EL1 TSSC2-201ENST00000450217 709 ntBASIC25.38■■□□□ 1.65
USP54Q70EL1 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
USP54Q70EL1 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC25.38■■□□□ 1.65
USP54Q70EL1 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC25.38■■□□□ 1.65
USP54Q70EL1 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC25.38■■□□□ 1.65
USP54Q70EL1 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC25.38■■□□□ 1.65
USP54Q70EL1 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC25.38■■□□□ 1.65
USP54Q70EL1 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP54Q70EL1 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
USP54Q70EL1 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC25.37■■□□□ 1.65
USP54Q70EL1 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC25.37■■□□□ 1.65
USP54Q70EL1 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
USP54Q70EL1 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC25.37■■□□□ 1.65
USP54Q70EL1 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
USP54Q70EL1 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC25.37■■□□□ 1.65
USP54Q70EL1 PRELID1P1-202ENST00000567272 903 ntBASIC25.37■■□□□ 1.65
USP54Q70EL1 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC25.37■■□□□ 1.65
USP54Q70EL1 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
USP54Q70EL1 LITAF-220ENST00000620789 692 ntTSL 5 BASIC25.37■■□□□ 1.65
USP54Q70EL1 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP54Q70EL1 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP54Q70EL1 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP54Q70EL1 KRT8P7-201ENST00000533003 1432 ntBASIC25.37■■□□□ 1.65
USP54Q70EL1 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
USP54Q70EL1 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
USP54Q70EL1 AL512353.2-201ENST00000448759 1962 ntBASIC25.37■■□□□ 1.65
USP54Q70EL1 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC25.37■■□□□ 1.65
USP54Q70EL1 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USP54Q70EL1 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
USP54Q70EL1 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
USP54Q70EL1 PVRIG2P-201ENST00000435460 978 ntBASIC25.36■■□□□ 1.65
USP54Q70EL1 TPM4P1-201ENST00000436100 807 ntBASIC25.36■■□□□ 1.65
USP54Q70EL1 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
USP54Q70EL1 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC25.36■■□□□ 1.65
USP54Q70EL1 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC25.36■■□□□ 1.65
USP54Q70EL1 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC25.36■■□□□ 1.65
USP54Q70EL1 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
USP54Q70EL1 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms