Protein–RNA interactions for Protein: Q496Y0

LONRF3, LON peptidase N-terminal domain and RING finger protein 3, humanhuman

Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3Q496Y0 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.65■■□□□ 1.06
LONRF3Q496Y0 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 BX088651.1-201ENST00000540551 451 ntBASIC21.65■■□□□ 1.06
LONRF3Q496Y0 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 AP001412.1-201ENST00000608405 714 ntBASIC21.65■■□□□ 1.06
LONRF3Q496Y0 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.65■■□□□ 1.06
LONRF3Q496Y0 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC21.64■■□□□ 1.06
LONRF3Q496Y0 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.64■■□□□ 1.05
LONRF3Q496Y0 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LONRF3Q496Y0 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
LONRF3Q496Y0 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.64■■□□□ 1.05
LONRF3Q496Y0 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.64■■□□□ 1.05
LONRF3Q496Y0 AL355075.4-201ENST00000554988 638 ntBASIC21.64■■□□□ 1.05
LONRF3Q496Y0 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.64■■□□□ 1.05
LONRF3Q496Y0 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.64■■□□□ 1.05
LONRF3Q496Y0 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LONRF3Q496Y0 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LONRF3Q496Y0 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LONRF3Q496Y0 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LONRF3Q496Y0 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.64■■□□□ 1.05
LONRF3Q496Y0 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LONRF3Q496Y0 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
LONRF3Q496Y0 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
LONRF3Q496Y0 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 KRT16P5-201ENST00000455284 522 ntBASIC21.63■■□□□ 1.05
LONRF3Q496Y0 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 AF186192.3-201ENST00000583427 947 ntBASIC21.63■■□□□ 1.05
LONRF3Q496Y0 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
LONRF3Q496Y0 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 UBQLN4P1-201ENST00000461599 1801 ntBASIC21.62■■□□□ 1.05
LONRF3Q496Y0 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 FAM197Y1-201ENST00000421178 764 ntBASIC21.62■■□□□ 1.05
LONRF3Q496Y0 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 MIR4785-201ENST00000585005 73 ntBASIC21.62■■□□□ 1.05
LONRF3Q496Y0 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LONRF3Q496Y0 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LONRF3Q496Y0 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LONRF3Q496Y0 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.61■■□□□ 1.05
LONRF3Q496Y0 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
LONRF3Q496Y0 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.61■■□□□ 1.05
LONRF3Q496Y0 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC21.61■■□□□ 1.05
LONRF3Q496Y0 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LONRF3Q496Y0 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
LONRF3Q496Y0 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC21.61■■□□□ 1.05
LONRF3Q496Y0 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LONRF3Q496Y0 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LONRF3Q496Y0 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
LONRF3Q496Y0 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms