Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP41Q3LFD5 AC112907.2-201ENST00000448639 330 ntBASIC20.24■□□□□ 0.83
USP41Q3LFD5 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.24■□□□□ 0.83
USP41Q3LFD5 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.24■□□□□ 0.83
USP41Q3LFD5 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.24■□□□□ 0.83
USP41Q3LFD5 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP41Q3LFD5 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
USP41Q3LFD5 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP41Q3LFD5 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP41Q3LFD5 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
USP41Q3LFD5 AC112907.3-201ENST00000577781 2400 ntBASIC20.24■□□□□ 0.83
USP41Q3LFD5 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
USP41Q3LFD5 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.24■□□□□ 0.83
USP41Q3LFD5 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP41Q3LFD5 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP41Q3LFD5 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP41Q3LFD5 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP41Q3LFD5 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP41Q3LFD5 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP41Q3LFD5 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 AC005332.1-201ENST00000577698 1310 ntBASIC20.23■□□□□ 0.83
USP41Q3LFD5 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP41Q3LFD5 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USP41Q3LFD5 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USP41Q3LFD5 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.23■□□□□ 0.83
USP41Q3LFD5 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.22■□□□□ 0.83
USP41Q3LFD5 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.22■□□□□ 0.83
USP41Q3LFD5 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
USP41Q3LFD5 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.22■□□□□ 0.83
USP41Q3LFD5 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.22■□□□□ 0.83
USP41Q3LFD5 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.22■□□□□ 0.83
USP41Q3LFD5 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC20.22■□□□□ 0.83
USP41Q3LFD5 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP41Q3LFD5 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.22■□□□□ 0.83
USP41Q3LFD5 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC20.22■□□□□ 0.83
USP41Q3LFD5 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.22■□□□□ 0.83
USP41Q3LFD5 AC116407.4-201ENST00000623319 1061 ntBASIC20.22■□□□□ 0.83
USP41Q3LFD5 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP41Q3LFD5 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP41Q3LFD5 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP41Q3LFD5 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USP41Q3LFD5 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP41Q3LFD5 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
USP41Q3LFD5 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
USP41Q3LFD5 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.22■□□□□ 0.83
USP41Q3LFD5 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.22■□□□□ 0.83
USP41Q3LFD5 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP41Q3LFD5 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP41Q3LFD5 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP41Q3LFD5 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.21■□□□□ 0.83
USP41Q3LFD5 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP41Q3LFD5 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.21■□□□□ 0.83
USP41Q3LFD5 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.21■□□□□ 0.83
USP41Q3LFD5 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
USP41Q3LFD5 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.21■□□□□ 0.83
USP41Q3LFD5 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
USP41Q3LFD5 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
USP41Q3LFD5 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.21■□□□□ 0.83
USP41Q3LFD5 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.21■□□□□ 0.83
USP41Q3LFD5 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
USP41Q3LFD5 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.21■□□□□ 0.83
USP41Q3LFD5 AL136038.3-201ENST00000561909 1096 ntBASIC20.21■□□□□ 0.83
USP41Q3LFD5 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.21■□□□□ 0.83
USP41Q3LFD5 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.21■□□□□ 0.83
USP41Q3LFD5 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.21■□□□□ 0.83
USP41Q3LFD5 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP41Q3LFD5 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
USP41Q3LFD5 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP41Q3LFD5 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
USP41Q3LFD5 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
USP41Q3LFD5 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP41Q3LFD5 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP41Q3LFD5 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP41Q3LFD5 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USP41Q3LFD5 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP41Q3LFD5 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP41Q3LFD5 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP41Q3LFD5 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
USP41Q3LFD5 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP41Q3LFD5 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP41Q3LFD5 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP41Q3LFD5 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USP41Q3LFD5 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP41Q3LFD5 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.2■□□□□ 0.82
USP41Q3LFD5 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USP41Q3LFD5 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms