Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL7A1Q02388 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
COL7A1Q02388 IGHV3-22-201ENST00000520721 359 ntBASIC13.64□□□□□ -0.23
COL7A1Q02388 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC13.64□□□□□ -0.23
COL7A1Q02388 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC13.64□□□□□ -0.23
COL7A1Q02388 AC148477.8-201ENST00000624298 468 ntBASIC13.64□□□□□ -0.23
COL7A1Q02388 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
COL7A1Q02388 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL7A1Q02388 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL7A1Q02388 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL7A1Q02388 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL7A1Q02388 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL7A1Q02388 MED22-202ENST00000371999 987 ntTSL 3 BASIC13.64□□□□□ -0.23
COL7A1Q02388 MIR564-202ENST00000385049 94 ntBASIC13.64□□□□□ -0.23
COL7A1Q02388 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL7A1Q02388 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC13.64□□□□□ -0.23
COL7A1Q02388 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC13.64□□□□□ -0.23
COL7A1Q02388 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL7A1Q02388 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC13.64□□□□□ -0.23
COL7A1Q02388 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC13.64□□□□□ -0.23
COL7A1Q02388 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL7A1Q02388 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC13.63□□□□□ -0.23
COL7A1Q02388 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC13.63□□□□□ -0.23
COL7A1Q02388 NMU-202ENST00000505262 693 ntTSL 3 BASIC13.63□□□□□ -0.23
COL7A1Q02388 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC13.63□□□□□ -0.23
COL7A1Q02388 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC13.63□□□□□ -0.23
COL7A1Q02388 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL7A1Q02388 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
COL7A1Q02388 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL7A1Q02388 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL7A1Q02388 RPL13AP23-201ENST00000480739 586 ntBASIC13.63□□□□□ -0.23
COL7A1Q02388 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC13.63□□□□□ -0.23
COL7A1Q02388 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL7A1Q02388 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC13.63□□□□□ -0.23
COL7A1Q02388 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL7A1Q02388 PIN1-206ENST00000587625 878 ntTSL 2 BASIC13.63□□□□□ -0.23
COL7A1Q02388 TP73-AS1-207ENST00000624167 988 ntBASIC13.63□□□□□ -0.23
COL7A1Q02388 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL7A1Q02388 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
COL7A1Q02388 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL7A1Q02388 PMS2P7-201ENST00000506558 1336 ntBASIC13.63□□□□□ -0.23
COL7A1Q02388 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
COL7A1Q02388 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL7A1Q02388 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL7A1Q02388 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
COL7A1Q02388 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
COL7A1Q02388 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
COL7A1Q02388 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
COL7A1Q02388 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 BAALC-202ENST00000306391 243 ntTSL 5 BASIC13.62□□□□□ -0.23
COL7A1Q02388 BAALC-204ENST00000330955 222 ntTSL 5 BASIC13.62□□□□□ -0.23
COL7A1Q02388 FICD-205ENST00000552758 603 ntTSL 2 BASIC13.62□□□□□ -0.23
COL7A1Q02388 MIR3917-201ENST00000580971 93 ntBASIC13.62□□□□□ -0.23
COL7A1Q02388 AC099336.1-202ENST00000602961 463 ntBASIC13.62□□□□□ -0.23
COL7A1Q02388 AC064862.7-201ENST00000604520 867 ntBASIC13.62□□□□□ -0.23
COL7A1Q02388 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC13.62□□□□□ -0.23
COL7A1Q02388 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC13.62□□□□□ -0.23
COL7A1Q02388 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC13.62□□□□□ -0.23
COL7A1Q02388 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
COL7A1Q02388 IGHV3-47-201ENST00000425060 335 ntBASIC13.62□□□□□ -0.23
COL7A1Q02388 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC13.62□□□□□ -0.23
COL7A1Q02388 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC13.62□□□□□ -0.23
COL7A1Q02388 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC13.62□□□□□ -0.23
COL7A1Q02388 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC13.62□□□□□ -0.23
COL7A1Q02388 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 ME2-216ENST00000639850 2331 ntTSL 5 BASIC13.62□□□□□ -0.23
COL7A1Q02388 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
COL7A1Q02388 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
COL7A1Q02388 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL7A1Q02388 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC13.61□□□□□ -0.23
COL7A1Q02388 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL7A1Q02388 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL7A1Q02388 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL7A1Q02388 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL7A1Q02388 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL7A1Q02388 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL7A1Q02388 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC13.61□□□□□ -0.23
COL7A1Q02388 FAM197Y8-203ENST00000450145 560 ntBASIC13.61□□□□□ -0.23
COL7A1Q02388 TPM1-218ENST00000559281 851 ntTSL 5 BASIC13.61□□□□□ -0.23
COL7A1Q02388 AC009065.1-201ENST00000564055 1225 ntBASIC13.61□□□□□ -0.23
COL7A1Q02388 AC010327.4-202ENST00000591484 748 ntBASIC13.61□□□□□ -0.23
COL7A1Q02388 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL7A1Q02388 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
COL7A1Q02388 NSUN5P1-202ENST00000421140 1535 ntBASIC13.61□□□□□ -0.23
COL7A1Q02388 NSUN5P2-203ENST00000457352 1529 ntBASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms