Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 KRT8P3-201ENST00000519669 1449 ntBASIC21.65■■□□□ 1.06
CCNA1P78396 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.65■■□□□ 1.06
CCNA1P78396 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCNA1P78396 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
CCNA1P78396 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCNA1P78396 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.65■■□□□ 1.06
CCNA1P78396 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC21.65■■□□□ 1.06
CCNA1P78396 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.65■■□□□ 1.06
CCNA1P78396 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCNA1P78396 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCNA1P78396 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCNA1P78396 AC112497.1-201ENST00000624824 639 ntBASIC21.65■■□□□ 1.06
CCNA1P78396 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC21.65■■□□□ 1.06
CCNA1P78396 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.65■■□□□ 1.06
CCNA1P78396 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC21.65■■□□□ 1.06
CCNA1P78396 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCNA1P78396 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC21.65■■□□□ 1.06
CCNA1P78396 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCNA1P78396 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCNA1P78396 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCNA1P78396 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCNA1P78396 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCNA1P78396 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCNA1P78396 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.64■■□□□ 1.05
CCNA1P78396 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
CCNA1P78396 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC21.64■■□□□ 1.05
CCNA1P78396 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
CCNA1P78396 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC21.64■■□□□ 1.05
CCNA1P78396 SEC1P-202ENST00000473944 940 ntBASIC21.64■■□□□ 1.05
CCNA1P78396 KRT8P26-201ENST00000534154 1276 ntBASIC21.64■■□□□ 1.05
CCNA1P78396 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.64■■□□□ 1.05
CCNA1P78396 SPEG-225ENST00000617028 815 ntTSL 5 BASIC21.64■■□□□ 1.05
CCNA1P78396 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC21.64■■□□□ 1.05
CCNA1P78396 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCNA1P78396 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCNA1P78396 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.64■■□□□ 1.05
CCNA1P78396 GOLGA6L5P-202ENST00000515341 1828 ntBASIC21.64■■□□□ 1.05
CCNA1P78396 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCNA1P78396 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.64■■□□□ 1.05
CCNA1P78396 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.64■■□□□ 1.05
CCNA1P78396 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCNA1P78396 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.63■■□□□ 1.05
CCNA1P78396 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCNA1P78396 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCNA1P78396 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCNA1P78396 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCNA1P78396 AL162741.1-201ENST00000565563 1558 ntBASIC21.63■■□□□ 1.05
CCNA1P78396 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC21.63■■□□□ 1.05
CCNA1P78396 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC21.63■■□□□ 1.05
CCNA1P78396 RN7SL510P-201ENST00000581311 263 ntBASIC21.63■■□□□ 1.05
CCNA1P78396 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CCNA1P78396 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCNA1P78396 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCNA1P78396 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCNA1P78396 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC21.63■■□□□ 1.05
CCNA1P78396 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CCNA1P78396 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCNA1P78396 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
CCNA1P78396 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCNA1P78396 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CCNA1P78396 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC21.62■■□□□ 1.05
CCNA1P78396 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 AC093525.10-201ENST00000625130 1569 ntBASIC21.62■■□□□ 1.05
CCNA1P78396 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.62■■□□□ 1.05
CCNA1P78396 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.62■■□□□ 1.05
CCNA1P78396 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC21.62■■□□□ 1.05
CCNA1P78396 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 AC004870.1-201ENST00000315132 882 ntBASIC21.62■■□□□ 1.05
CCNA1P78396 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC21.62■■□□□ 1.05
CCNA1P78396 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 SKP2-204ENST00000508514 821 ntTSL 3 BASIC21.62■■□□□ 1.05
CCNA1P78396 NAA38-203ENST00000575071 553 ntTSL 2 BASIC21.62■■□□□ 1.05
CCNA1P78396 MIR3180-1-201ENST00000580374 94 ntBASIC21.62■■□□□ 1.05
CCNA1P78396 MIR3180-3-201ENST00000584616 94 ntBASIC21.62■■□□□ 1.05
CCNA1P78396 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC21.62■■□□□ 1.05
CCNA1P78396 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC21.62■■□□□ 1.05
CCNA1P78396 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
CCNA1P78396 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.62■■□□□ 1.05
CCNA1P78396 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
CCNA1P78396 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCNA1P78396 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCNA1P78396 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCNA1P78396 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.61■■□□□ 1.05
CCNA1P78396 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC21.61■■□□□ 1.05
CCNA1P78396 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCNA1P78396 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.61■■□□□ 1.05
CCNA1P78396 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CCNA1P78396 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms