Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
YBX1P67809 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
YBX1P67809 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
YBX1P67809 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.58■□□□□ 0.56
YBX1P67809 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
YBX1P67809 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
YBX1P67809 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
YBX1P67809 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
YBX1P67809 MESTP1-201ENST00000404287 994 ntBASIC18.58■□□□□ 0.56
YBX1P67809 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.58■□□□□ 0.56
YBX1P67809 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.58■□□□□ 0.56
YBX1P67809 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.58■□□□□ 0.56
YBX1P67809 MIR4497-201ENST00000583208 89 ntBASIC18.58■□□□□ 0.56
YBX1P67809 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.58■□□□□ 0.56
YBX1P67809 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
YBX1P67809 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
YBX1P67809 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
YBX1P67809 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
YBX1P67809 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
YBX1P67809 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
YBX1P67809 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
YBX1P67809 KRT8P41-201ENST00000533985 1514 ntBASIC18.58■□□□□ 0.56
YBX1P67809 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.58■□□□□ 0.56
YBX1P67809 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.58■□□□□ 0.56
YBX1P67809 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
YBX1P67809 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
YBX1P67809 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
YBX1P67809 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.57■□□□□ 0.56
YBX1P67809 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
YBX1P67809 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
YBX1P67809 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.57■□□□□ 0.56
YBX1P67809 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
YBX1P67809 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
YBX1P67809 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
YBX1P67809 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.57■□□□□ 0.56
YBX1P67809 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.57■□□□□ 0.56
YBX1P67809 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.57■□□□□ 0.56
YBX1P67809 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.57■□□□□ 0.56
YBX1P67809 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.57■□□□□ 0.56
YBX1P67809 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.57■□□□□ 0.56
YBX1P67809 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.57■□□□□ 0.56
YBX1P67809 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
YBX1P67809 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
YBX1P67809 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.56■□□□□ 0.56
YBX1P67809 AC006333.2-201ENST00000607957 2099 ntBASIC18.56■□□□□ 0.56
YBX1P67809 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
YBX1P67809 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
YBX1P67809 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
YBX1P67809 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
YBX1P67809 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.56■□□□□ 0.56
YBX1P67809 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
YBX1P67809 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.56■□□□□ 0.56
YBX1P67809 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.56■□□□□ 0.56
YBX1P67809 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.56■□□□□ 0.56
YBX1P67809 AC026471.5-201ENST00000615068 467 ntBASIC18.56■□□□□ 0.56
YBX1P67809 AC131212.4-201ENST00000623606 975 ntBASIC18.56■□□□□ 0.56
YBX1P67809 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
YBX1P67809 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
YBX1P67809 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.56■□□□□ 0.56
YBX1P67809 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
YBX1P67809 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
YBX1P67809 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.56■□□□□ 0.56
YBX1P67809 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.56■□□□□ 0.56
YBX1P67809 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
YBX1P67809 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
YBX1P67809 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
YBX1P67809 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
YBX1P67809 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
YBX1P67809 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
YBX1P67809 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
YBX1P67809 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
YBX1P67809 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
YBX1P67809 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
YBX1P67809 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
YBX1P67809 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
YBX1P67809 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
YBX1P67809 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
YBX1P67809 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
YBX1P67809 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
YBX1P67809 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.55■□□□□ 0.56
YBX1P67809 TEX21P-204ENST00000641479 1693 ntBASIC18.55■□□□□ 0.56
YBX1P67809 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
YBX1P67809 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
YBX1P67809 NUDT16P1-203ENST00000513809 620 ntBASIC18.55■□□□□ 0.56
YBX1P67809 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.55■□□□□ 0.56
YBX1P67809 AP003071.4-201ENST00000562276 1284 ntBASIC18.55■□□□□ 0.56
YBX1P67809 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.55■□□□□ 0.56
YBX1P67809 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.55■□□□□ 0.56
YBX1P67809 AP001412.1-201ENST00000608405 714 ntBASIC18.55■□□□□ 0.56
YBX1P67809 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.55■□□□□ 0.56
YBX1P67809 REXO1L10P-201ENST00000615707 1290 ntBASIC18.55■□□□□ 0.56
YBX1P67809 REXO1L12P-201ENST00000622156 912 ntBASIC18.55■□□□□ 0.56
YBX1P67809 AL031985.4-201ENST00000642138 673 ntBASIC18.55■□□□□ 0.56
YBX1P67809 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
YBX1P67809 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
YBX1P67809 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
YBX1P67809 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.55■□□□□ 0.56
YBX1P67809 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
YBX1P67809 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
YBX1P67809 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms