Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
LIMK1P53667 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMK1P53667 AC016734.2-201ENST00000624325 1377 ntBASIC18.81■□□□□ 0.6
LIMK1P53667 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMK1P53667 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMK1P53667 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
LIMK1P53667 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMK1P53667 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMK1P53667 EMBP1-201ENST00000458200 901 ntBASIC18.81■□□□□ 0.6
LIMK1P53667 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.81■□□□□ 0.6
LIMK1P53667 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMK1P53667 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.81■□□□□ 0.6
LIMK1P53667 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
LIMK1P53667 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMK1P53667 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
LIMK1P53667 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMK1P53667 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
LIMK1P53667 AC006128.1-201ENST00000624704 1661 ntBASIC18.81■□□□□ 0.6
LIMK1P53667 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIMK1P53667 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
LIMK1P53667 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMK1P53667 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
LIMK1P53667 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMK1P53667 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.81■□□□□ 0.6
LIMK1P53667 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.81■□□□□ 0.6
LIMK1P53667 BX119927.1-201ENST00000636596 1552 ntBASIC18.81■□□□□ 0.6
LIMK1P53667 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMK1P53667 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMK1P53667 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMK1P53667 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMK1P53667 AC121338.2-201ENST00000622535 1744 ntBASIC18.8■□□□□ 0.6
LIMK1P53667 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMK1P53667 KRT18P1-202ENST00000452408 1331 ntBASIC18.8■□□□□ 0.6
LIMK1P53667 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMK1P53667 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMK1P53667 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMK1P53667 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMK1P53667 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMK1P53667 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMK1P53667 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
LIMK1P53667 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
LIMK1P53667 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMK1P53667 TSPY19P-201ENST00000418461 509 ntBASIC18.8■□□□□ 0.6
LIMK1P53667 TSPY18P-201ENST00000441642 509 ntBASIC18.8■□□□□ 0.6
LIMK1P53667 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMK1P53667 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMK1P53667 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.8■□□□□ 0.6
LIMK1P53667 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMK1P53667 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.8■□□□□ 0.6
LIMK1P53667 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMK1P53667 PHGDH-210ENST00000641115 1638 ntBASIC18.8■□□□□ 0.6
LIMK1P53667 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMK1P53667 KRT8P8-201ENST00000434750 1448 ntBASIC18.8■□□□□ 0.6
LIMK1P53667 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMK1P53667 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIMK1P53667 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMK1P53667 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMK1P53667 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIMK1P53667 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMK1P53667 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMK1P53667 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMK1P53667 AP002383.4-201ENST00000442518 975 ntBASIC18.79■□□□□ 0.6
LIMK1P53667 AL662844.1-201ENST00000546340 181 ntBASIC18.79■□□□□ 0.6
LIMK1P53667 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMK1P53667 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LIMK1P53667 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMK1P53667 AC139530.3-201ENST00000620344 690 ntBASIC18.79■□□□□ 0.6
LIMK1P53667 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMK1P53667 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMK1P53667 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMK1P53667 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIMK1P53667 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMK1P53667 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMK1P53667 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMK1P53667 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.79■□□□□ 0.6
LIMK1P53667 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LIMK1P53667 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
LIMK1P53667 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
LIMK1P53667 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.78■□□□□ 0.6
LIMK1P53667 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK1P53667 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK1P53667 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.78■□□□□ 0.6
LIMK1P53667 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.78■□□□□ 0.6
LIMK1P53667 AC034232.1-201ENST00000506026 1064 ntBASIC18.78■□□□□ 0.6
LIMK1P53667 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK1P53667 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK1P53667 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.78■□□□□ 0.6
LIMK1P53667 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK1P53667 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK1P53667 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
LIMK1P53667 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.78■□□□□ 0.6
LIMK1P53667 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.78■□□□□ 0.6
LIMK1P53667 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK1P53667 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
LIMK1P53667 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.78■□□□□ 0.6
LIMK1P53667 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK1P53667 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMK1P53667 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK1P53667 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMK1P53667 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms