Protein–RNA interactions for Protein: P43307

SSR1, Translocon-associated protein subunit alpha, humanhuman

Known RBP Predictions only

Length 286 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1P43307 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.23■□□□□ 0.83
SSR1P43307 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SSR1P43307 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SSR1P43307 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SSR1P43307 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SSR1P43307 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SSR1P43307 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SSR1P43307 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SSR1P43307 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SSR1P43307 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
SSR1P43307 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
SSR1P43307 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SSR1P43307 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.22■□□□□ 0.83
SSR1P43307 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SSR1P43307 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SSR1P43307 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
SSR1P43307 KRT17P3-201ENST00000420566 1262 ntBASIC20.22■□□□□ 0.83
SSR1P43307 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.22■□□□□ 0.83
SSR1P43307 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.22■□□□□ 0.83
SSR1P43307 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SSR1P43307 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
SSR1P43307 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.22■□□□□ 0.83
SSR1P43307 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
SSR1P43307 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.22■□□□□ 0.83
SSR1P43307 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.22■□□□□ 0.83
SSR1P43307 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.22■□□□□ 0.83
SSR1P43307 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SSR1P43307 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SSR1P43307 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SSR1P43307 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SSR1P43307 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.22■□□□□ 0.83
SSR1P43307 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SSR1P43307 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SSR1P43307 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SSR1P43307 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SSR1P43307 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SSR1P43307 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SSR1P43307 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SSR1P43307 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
SSR1P43307 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SSR1P43307 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SSR1P43307 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SSR1P43307 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SSR1P43307 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SSR1P43307 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
SSR1P43307 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SSR1P43307 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.21■□□□□ 0.83
SSR1P43307 AC008403.3-201ENST00000598924 454 ntBASIC20.21■□□□□ 0.83
SSR1P43307 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.21■□□□□ 0.83
SSR1P43307 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SSR1P43307 NBPF21P-201ENST00000425093 1451 ntBASIC20.21■□□□□ 0.83
SSR1P43307 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SSR1P43307 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.21■□□□□ 0.83
SSR1P43307 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
SSR1P43307 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.21■□□□□ 0.83
SSR1P43307 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SSR1P43307 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SSR1P43307 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.21■□□□□ 0.83
SSR1P43307 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.21■□□□□ 0.83
SSR1P43307 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
SSR1P43307 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSR1P43307 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSR1P43307 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SSR1P43307 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSR1P43307 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
SSR1P43307 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.2■□□□□ 0.82
SSR1P43307 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SSR1P43307 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.2■□□□□ 0.82
SSR1P43307 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSR1P43307 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SSR1P43307 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.2■□□□□ 0.82
SSR1P43307 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.2■□□□□ 0.82
SSR1P43307 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSR1P43307 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SSR1P43307 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSR1P43307 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSR1P43307 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSR1P43307 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SSR1P43307 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SSR1P43307 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSR1P43307 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSR1P43307 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SSR1P43307 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.2■□□□□ 0.82
SSR1P43307 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSR1P43307 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SSR1P43307 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SSR1P43307 AC093503.3-201ENST00000624917 2352 ntBASIC20.2■□□□□ 0.82
SSR1P43307 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC20.2■□□□□ 0.82
SSR1P43307 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SSR1P43307 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
SSR1P43307 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.19■□□□□ 0.82
SSR1P43307 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SSR1P43307 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSR1P43307 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.19■□□□□ 0.82
SSR1P43307 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SSR1P43307 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.19■□□□□ 0.82
SSR1P43307 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SSR1P43307 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SSR1P43307 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSR1P43307 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms