Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL8A1P27658 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
COL8A1P27658 TSPY22P-201ENST00000427496 604 ntBASIC16.62■□□□□ 0.25
COL8A1P27658 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.62■□□□□ 0.25
COL8A1P27658 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL8A1P27658 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.62■□□□□ 0.25
COL8A1P27658 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL8A1P27658 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.62■□□□□ 0.25
COL8A1P27658 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.62■□□□□ 0.25
COL8A1P27658 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.62■□□□□ 0.25
COL8A1P27658 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.62■□□□□ 0.25
COL8A1P27658 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.62■□□□□ 0.25
COL8A1P27658 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL8A1P27658 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL8A1P27658 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL8A1P27658 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL8A1P27658 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL8A1P27658 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC16.62■□□□□ 0.25
COL8A1P27658 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
COL8A1P27658 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
COL8A1P27658 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
COL8A1P27658 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL8A1P27658 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL8A1P27658 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.62■□□□□ 0.25
COL8A1P27658 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.62■□□□□ 0.25
COL8A1P27658 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC16.61■□□□□ 0.25
COL8A1P27658 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC16.61■□□□□ 0.25
COL8A1P27658 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.61■□□□□ 0.25
COL8A1P27658 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL8A1P27658 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
COL8A1P27658 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL8A1P27658 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL8A1P27658 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL8A1P27658 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL8A1P27658 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL8A1P27658 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL8A1P27658 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL8A1P27658 MIR940-201ENST00000401276 94 ntBASIC16.61■□□□□ 0.25
COL8A1P27658 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.61■□□□□ 0.25
COL8A1P27658 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
COL8A1P27658 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.61■□□□□ 0.25
COL8A1P27658 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.61■□□□□ 0.25
COL8A1P27658 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.61■□□□□ 0.25
COL8A1P27658 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.61■□□□□ 0.25
COL8A1P27658 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.61■□□□□ 0.25
COL8A1P27658 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
COL8A1P27658 AC022898.2-201ENST00000616822 1312 ntBASIC16.61■□□□□ 0.25
COL8A1P27658 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL8A1P27658 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
COL8A1P27658 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC16.61■□□□□ 0.25
COL8A1P27658 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC16.61■□□□□ 0.25
COL8A1P27658 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
COL8A1P27658 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC16.61■□□□□ 0.25
COL8A1P27658 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL8A1P27658 AC026310.3-201ENST00000625186 2373 ntBASIC16.6■□□□□ 0.25
COL8A1P27658 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC16.6■□□□□ 0.25
COL8A1P27658 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL8A1P27658 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC16.6■□□□□ 0.25
COL8A1P27658 PALM-208ENST00000592155 2272 ntTSL 4 BASIC16.6■□□□□ 0.25
COL8A1P27658 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL8A1P27658 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL8A1P27658 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL8A1P27658 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL8A1P27658 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL8A1P27658 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
COL8A1P27658 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL8A1P27658 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.6■□□□□ 0.25
COL8A1P27658 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL8A1P27658 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.6■□□□□ 0.25
COL8A1P27658 DRAXINP1-201ENST00000437611 948 ntBASIC16.6■□□□□ 0.25
COL8A1P27658 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.6■□□□□ 0.25
COL8A1P27658 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.6■□□□□ 0.25
COL8A1P27658 AC012615.1-201ENST00000565797 1299 ntBASIC16.6■□□□□ 0.25
COL8A1P27658 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.6■□□□□ 0.25
COL8A1P27658 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
COL8A1P27658 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.6■□□□□ 0.25
COL8A1P27658 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
COL8A1P27658 AL353801.3-201ENST00000609898 542 ntBASIC16.6■□□□□ 0.25
COL8A1P27658 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.6■□□□□ 0.25
COL8A1P27658 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL8A1P27658 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL8A1P27658 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC16.6■□□□□ 0.25
COL8A1P27658 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL8A1P27658 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL8A1P27658 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL8A1P27658 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.6■□□□□ 0.25
COL8A1P27658 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC16.6■□□□□ 0.25
COL8A1P27658 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL8A1P27658 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC16.6■□□□□ 0.25
COL8A1P27658 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.59■□□□□ 0.25
COL8A1P27658 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.59■□□□□ 0.25
COL8A1P27658 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL8A1P27658 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL8A1P27658 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL8A1P27658 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL8A1P27658 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.59■□□□□ 0.25
COL8A1P27658 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.59■□□□□ 0.25
COL8A1P27658 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
COL8A1P27658 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.59■□□□□ 0.25
COL8A1P27658 AL139424.1-201ENST00000607572 797 ntBASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms