Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SDC1P18827 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.15■□□□□ 0.5
SDC1P18827 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDC1P18827 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.15■□□□□ 0.5
SDC1P18827 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.15■□□□□ 0.5
SDC1P18827 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.15■□□□□ 0.5
SDC1P18827 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.15■□□□□ 0.5
SDC1P18827 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDC1P18827 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
SDC1P18827 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.15■□□□□ 0.5
SDC1P18827 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.15■□□□□ 0.5
SDC1P18827 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDC1P18827 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDC1P18827 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDC1P18827 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDC1P18827 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SDC1P18827 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.15■□□□□ 0.5
SDC1P18827 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.15■□□□□ 0.5
SDC1P18827 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.14■□□□□ 0.5
SDC1P18827 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
SDC1P18827 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC1P18827 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
SDC1P18827 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
SDC1P18827 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC1P18827 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.14■□□□□ 0.49
SDC1P18827 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC1P18827 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC1P18827 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC1P18827 ESRRAP1-201ENST00000400596 1257 ntBASIC18.14■□□□□ 0.49
SDC1P18827 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.14■□□□□ 0.49
SDC1P18827 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SDC1P18827 KRT16P5-201ENST00000455284 522 ntBASIC18.14■□□□□ 0.49
SDC1P18827 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SDC1P18827 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.14■□□□□ 0.49
SDC1P18827 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
SDC1P18827 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.14■□□□□ 0.49
SDC1P18827 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC1P18827 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC1P18827 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SDC1P18827 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.14■□□□□ 0.49
SDC1P18827 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC1P18827 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC1P18827 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.14■□□□□ 0.49
SDC1P18827 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC1P18827 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.14■□□□□ 0.49
SDC1P18827 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SDC1P18827 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC1P18827 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC1P18827 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC1P18827 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SDC1P18827 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SDC1P18827 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC1P18827 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC1P18827 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC1P18827 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SDC1P18827 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.13■□□□□ 0.49
SDC1P18827 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SDC1P18827 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SDC1P18827 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC1P18827 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC1P18827 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.13■□□□□ 0.49
SDC1P18827 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.13■□□□□ 0.49
SDC1P18827 Z85996.1-201ENST00000494644 937 ntBASIC18.13■□□□□ 0.49
SDC1P18827 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.13■□□□□ 0.49
SDC1P18827 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
SDC1P18827 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SDC1P18827 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.13■□□□□ 0.49
SDC1P18827 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.13■□□□□ 0.49
SDC1P18827 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.13■□□□□ 0.49
SDC1P18827 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SDC1P18827 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
SDC1P18827 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SDC1P18827 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.13■□□□□ 0.49
SDC1P18827 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SDC1P18827 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC1P18827 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SDC1P18827 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SDC1P18827 ANO7L1-203ENST00000602586 1720 ntBASIC18.12■□□□□ 0.49
SDC1P18827 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
SDC1P18827 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.12■□□□□ 0.49
SDC1P18827 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SDC1P18827 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.12■□□□□ 0.49
SDC1P18827 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.12■□□□□ 0.49
SDC1P18827 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.12■□□□□ 0.49
SDC1P18827 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.12■□□□□ 0.49
SDC1P18827 AC124016.1-201ENST00000609552 612 ntBASIC18.12■□□□□ 0.49
SDC1P18827 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SDC1P18827 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SDC1P18827 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
SDC1P18827 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.12■□□□□ 0.49
SDC1P18827 AC005082.1-201ENST00000413042 2259 ntBASIC18.12■□□□□ 0.49
SDC1P18827 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.12■□□□□ 0.49
SDC1P18827 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
SDC1P18827 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
SDC1P18827 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SDC1P18827 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
SDC1P18827 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
SDC1P18827 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SDC1P18827 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SDC1P18827 AC090164.3-201ENST00000610780 2143 ntBASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms