Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 DFFB-203ENST00000341385 572 ntTSL 5 BASIC21.03■□□□□ 0.96
COL6A1P12109 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A1P12109 MIR574-201ENST00000385209 96 ntBASIC21.03■□□□□ 0.96
COL6A1P12109 KRT18P13-201ENST00000400056 1290 ntBASIC21.03■□□□□ 0.96
COL6A1P12109 AL590627.1-203ENST00000421194 1026 ntBASIC21.03■□□□□ 0.96
COL6A1P12109 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC21.03■□□□□ 0.96
COL6A1P12109 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC21.03■□□□□ 0.96
COL6A1P12109 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC21.03■□□□□ 0.96
COL6A1P12109 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC21.03■□□□□ 0.96
COL6A1P12109 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.03■□□□□ 0.96
COL6A1P12109 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.03■□□□□ 0.96
COL6A1P12109 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC21.03■□□□□ 0.96
COL6A1P12109 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.03■□□□□ 0.96
COL6A1P12109 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.03■□□□□ 0.96
COL6A1P12109 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A1P12109 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
COL6A1P12109 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.03■□□□□ 0.96
COL6A1P12109 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COL6A1P12109 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A1P12109 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A1P12109 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
COL6A1P12109 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
COL6A1P12109 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
COL6A1P12109 AKR1C7P-201ENST00000305623 895 ntBASIC21.02■□□□□ 0.96
COL6A1P12109 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
COL6A1P12109 AL023284.2-201ENST00000405850 579 ntBASIC21.02■□□□□ 0.96
COL6A1P12109 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.02■□□□□ 0.96
COL6A1P12109 AC104819.1-201ENST00000504587 486 ntBASIC21.02■□□□□ 0.96
COL6A1P12109 MIR3917-201ENST00000580971 93 ntBASIC21.02■□□□□ 0.96
COL6A1P12109 AF228730.7-201ENST00000641842 219 ntBASIC21.02■□□□□ 0.96
COL6A1P12109 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A1P12109 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
COL6A1P12109 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
COL6A1P12109 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A1P12109 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL6A1P12109 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A1P12109 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A1P12109 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
COL6A1P12109 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A1P12109 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.01■□□□□ 0.95
COL6A1P12109 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A1P12109 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.01■□□□□ 0.95
COL6A1P12109 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A1P12109 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
COL6A1P12109 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.01■□□□□ 0.95
COL6A1P12109 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
COL6A1P12109 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC21.01■□□□□ 0.95
COL6A1P12109 PPIE-208ENST00000470213 927 ntTSL 3 BASIC21.01■□□□□ 0.95
COL6A1P12109 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC21.01■□□□□ 0.95
COL6A1P12109 RNA5SP419-201ENST00000515908 135 ntBASIC21.01■□□□□ 0.95
COL6A1P12109 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.01■□□□□ 0.95
COL6A1P12109 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC21.01■□□□□ 0.95
COL6A1P12109 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A1P12109 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A1P12109 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
COL6A1P12109 AC009237.14-201ENST00000609975 1594 ntBASIC21.01■□□□□ 0.95
COL6A1P12109 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL6A1P12109 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A1P12109 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A1P12109 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21■□□□□ 0.95
COL6A1P12109 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A1P12109 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A1P12109 BAALC-202ENST00000306391 243 ntTSL 5 BASIC21■□□□□ 0.95
COL6A1P12109 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A1P12109 BAALC-204ENST00000330955 222 ntTSL 5 BASIC21■□□□□ 0.95
COL6A1P12109 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A1P12109 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC21■□□□□ 0.95
COL6A1P12109 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
COL6A1P12109 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC21■□□□□ 0.95
COL6A1P12109 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC21■□□□□ 0.95
COL6A1P12109 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL6A1P12109 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC21■□□□□ 0.95
COL6A1P12109 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
COL6A1P12109 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC21■□□□□ 0.95
COL6A1P12109 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A1P12109 TK1-205ENST00000590862 642 ntTSL 3 BASIC21■□□□□ 0.95
COL6A1P12109 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21■□□□□ 0.95
COL6A1P12109 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
COL6A1P12109 AC138894.3-201ENST00000603787 634 ntBASIC21■□□□□ 0.95
COL6A1P12109 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A1P12109 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A1P12109 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC21■□□□□ 0.95
COL6A1P12109 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A1P12109 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
COL6A1P12109 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A1P12109 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A1P12109 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A1P12109 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A1P12109 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.99■□□□□ 0.95
COL6A1P12109 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.99■□□□□ 0.95
COL6A1P12109 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.99■□□□□ 0.95
COL6A1P12109 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
COL6A1P12109 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A1P12109 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
COL6A1P12109 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A1P12109 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A1P12109 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.99■□□□□ 0.95
COL6A1P12109 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A1P12109 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL6A1P12109 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms