Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.39■□□□□ 0.7
HOXC11O43248 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
HOXC11O43248 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC11O43248 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.39■□□□□ 0.69
HOXC11O43248 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC11O43248 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.39■□□□□ 0.69
HOXC11O43248 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.39■□□□□ 0.69
HOXC11O43248 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
HOXC11O43248 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXC11O43248 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.39■□□□□ 0.69
HOXC11O43248 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.39■□□□□ 0.69
HOXC11O43248 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXC11O43248 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC11O43248 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC11O43248 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC11O43248 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
HOXC11O43248 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC11O43248 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.39■□□□□ 0.69
HOXC11O43248 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC11O43248 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC11O43248 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC11O43248 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC11O43248 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC11O43248 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC11O43248 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC11O43248 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC11O43248 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC11O43248 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC11O43248 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.38■□□□□ 0.69
HOXC11O43248 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC11O43248 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC11O43248 IER3-202ENST00000376377 1350 ntBASIC19.38■□□□□ 0.69
HOXC11O43248 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC11O43248 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
HOXC11O43248 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC11O43248 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC11O43248 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.38■□□□□ 0.69
HOXC11O43248 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.38■□□□□ 0.69
HOXC11O43248 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
HOXC11O43248 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC11O43248 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXC11O43248 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC11O43248 HYMAI.1-201ENST00000620949 238 ntBASIC19.38■□□□□ 0.69
HOXC11O43248 Z82202.1-201ENST00000623446 1880 ntBASIC19.38■□□□□ 0.69
HOXC11O43248 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.38■□□□□ 0.69
HOXC11O43248 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXC11O43248 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC11O43248 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC11O43248 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC11O43248 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC11O43248 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC11O43248 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
HOXC11O43248 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC11O43248 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXC11O43248 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC11O43248 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC11O43248 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HOXC11O43248 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC11O43248 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXC11O43248 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC11O43248 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC11O43248 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
HOXC11O43248 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC11O43248 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HOXC11O43248 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC11O43248 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC11O43248 AC005332.1-201ENST00000577698 1310 ntBASIC19.37■□□□□ 0.69
HOXC11O43248 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC11O43248 SPDYE15P-201ENST00000424157 909 ntBASIC19.37■□□□□ 0.69
HOXC11O43248 AC112907.2-201ENST00000448639 330 ntBASIC19.37■□□□□ 0.69
HOXC11O43248 AL136038.3-201ENST00000561909 1096 ntBASIC19.37■□□□□ 0.69
HOXC11O43248 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.37■□□□□ 0.69
HOXC11O43248 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
HOXC11O43248 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HOXC11O43248 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXC11O43248 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HOXC11O43248 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.37■□□□□ 0.69
HOXC11O43248 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC11O43248 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.37■□□□□ 0.69
HOXC11O43248 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
HOXC11O43248 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC11O43248 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC11O43248 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC11O43248 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.36■□□□□ 0.69
HOXC11O43248 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC11O43248 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC11O43248 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC11O43248 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC11O43248 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.36■□□□□ 0.69
HOXC11O43248 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
HOXC11O43248 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
HOXC11O43248 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.36■□□□□ 0.69
HOXC11O43248 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
HOXC11O43248 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC11O43248 MCCD1P1-208ENST00000445732 328 ntBASIC19.36■□□□□ 0.69
HOXC11O43248 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.36■□□□□ 0.69
HOXC11O43248 AC083849.1-201ENST00000615227 514 ntBASIC19.36■□□□□ 0.69
HOXC11O43248 AC116407.4-201ENST00000623319 1061 ntBASIC19.36■□□□□ 0.69
HOXC11O43248 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.36■□□□□ 0.69
HOXC11O43248 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms