Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CPSF4LA6NMK7 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CPSF4LA6NMK7 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.58■□□□□ 0.4
CPSF4LA6NMK7 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.58■□□□□ 0.4
CPSF4LA6NMK7 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.58■□□□□ 0.4
CPSF4LA6NMK7 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CPSF4LA6NMK7 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CPSF4LA6NMK7 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CPSF4LA6NMK7 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CPSF4LA6NMK7 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CPSF4LA6NMK7 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CPSF4LA6NMK7 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.58■□□□□ 0.4
CPSF4LA6NMK7 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CPSF4LA6NMK7 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.58■□□□□ 0.4
CPSF4LA6NMK7 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CPSF4LA6NMK7 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 AC104581.1-202ENST00000635932 2618 ntBASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CPSF4LA6NMK7 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 HLA-L-209ENST00000420110 1011 ntBASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.56■□□□□ 0.4
CPSF4LA6NMK7 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 FEM1AP3-201ENST00000403722 1741 ntBASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 BCL2-203ENST00000589955 5011 ntBASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms