Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 NCOA4-205ENST00000583565 2371 ntAPPRIS P1 TSL 2 BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 RNU1-49P-201ENST00000363468 159 ntBASIC8.91□□□□□ -0.98
SENP3Q9H4L4 Y_RNA.247-201ENST00000364500 92 ntBASIC8.91□□□□□ -0.98
SENP3Q9H4L4 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 RNA5SP156-201ENST00000410250 110 ntBASIC8.91□□□□□ -0.98
SENP3Q9H4L4 RPL12P3-201ENST00000440080 396 ntBASIC8.91□□□□□ -0.98
SENP3Q9H4L4 RN7SL326P-201ENST00000477493 296 ntBASIC8.91□□□□□ -0.98
SENP3Q9H4L4 RPL23AP97-201ENST00000568955 471 ntBASIC8.91□□□□□ -0.98
SENP3Q9H4L4 MIR4753-201ENST00000585119 83 ntBASIC8.91□□□□□ -0.98
SENP3Q9H4L4 MIR6809-201ENST00000612189 116 ntBASIC8.91□□□□□ -0.98
SENP3Q9H4L4 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 AL672167.1-203ENST00000641299 2975 ntBASIC8.91□□□□□ -0.98
SENP3Q9H4L4 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC8.9□□□□□ -0.98
SENP3Q9H4L4 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
SENP3Q9H4L4 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
SENP3Q9H4L4 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC8.9□□□□□ -0.98
SENP3Q9H4L4 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
SENP3Q9H4L4 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
SENP3Q9H4L4 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
SENP3Q9H4L4 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC8.9□□□□□ -0.98
SENP3Q9H4L4 MIRLET7A1-201ENST00000362295 80 ntBASIC8.9□□□□□ -0.98
SENP3Q9H4L4 SNORA1.3-201ENST00000384676 136 ntBASIC8.9□□□□□ -0.98
SENP3Q9H4L4 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC8.9□□□□□ -0.98
SENP3Q9H4L4 YME1L1P1-201ENST00000429435 297 ntBASIC8.9□□□□□ -0.98
SENP3Q9H4L4 RPL7AP49-201ENST00000429522 581 ntBASIC8.9□□□□□ -0.98
SENP3Q9H4L4 AL591438.1-201ENST00000433508 581 ntBASIC8.9□□□□□ -0.98
SENP3Q9H4L4 AC099677.2-201ENST00000436385 175 ntBASIC8.9□□□□□ -0.98
SENP3Q9H4L4 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC8.9□□□□□ -0.98
SENP3Q9H4L4 RN7SL808P-201ENST00000496066 299 ntBASIC8.9□□□□□ -0.98
SENP3Q9H4L4 RNU5F-4P-201ENST00000516581 114 ntBASIC8.9□□□□□ -0.98
SENP3Q9H4L4 SNORA18.7-201ENST00000516910 131 ntBASIC8.9□□□□□ -0.98
SENP3Q9H4L4 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC8.9□□□□□ -0.98
SENP3Q9H4L4 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
SENP3Q9H4L4 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
SENP3Q9H4L4 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC8.9□□□□□ -0.98
SENP3Q9H4L4 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC8.9□□□□□ -0.98
SENP3Q9H4L4 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC8.9□□□□□ -0.99
SENP3Q9H4L4 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC8.9□□□□□ -0.99
SENP3Q9H4L4 NBPF8-201ENST00000583271 5330 ntBASIC8.9□□□□□ -0.99
SENP3Q9H4L4 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC8.9□□□□□ -0.99
SENP3Q9H4L4 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC8.9□□□□□ -0.99
SENP3Q9H4L4 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
SENP3Q9H4L4 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC8.89□□□□□ -0.99
SENP3Q9H4L4 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC8.89□□□□□ -0.99
SENP3Q9H4L4 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC8.89□□□□□ -0.99
SENP3Q9H4L4 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
SENP3Q9H4L4 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC8.89□□□□□ -0.99
SENP3Q9H4L4 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC8.89□□□□□ -0.99
SENP3Q9H4L4 SNORD115-28-201ENST00000363931 81 ntBASIC8.89□□□□□ -0.99
SENP3Q9H4L4 RNU6-540P-201ENST00000384622 101 ntBASIC8.89□□□□□ -0.99
SENP3Q9H4L4 MIR143-201ENST00000385300 106 ntBASIC8.89□□□□□ -0.99
SENP3Q9H4L4 AL133475.1-201ENST00000404414 305 ntBASIC8.89□□□□□ -0.99
SENP3Q9H4L4 MRPL53P1-201ENST00000414323 319 ntBASIC8.89□□□□□ -0.99
SENP3Q9H4L4 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC8.89□□□□□ -0.99
SENP3Q9H4L4 FTLP8-201ENST00000446770 267 ntBASIC8.89□□□□□ -0.99
SENP3Q9H4L4 AL445665.1-202ENST00000452436 324 ntBASIC8.89□□□□□ -0.99
SENP3Q9H4L4 RNU6-1096P-201ENST00000517089 102 ntBASIC8.89□□□□□ -0.99
SENP3Q9H4L4 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC8.89□□□□□ -0.99
SENP3Q9H4L4 AC233702.9-201ENST00000581528 203 ntBASIC8.89□□□□□ -0.99
SENP3Q9H4L4 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC8.89□□□□□ -0.99
SENP3Q9H4L4 MIR7155-201ENST00000615925 56 ntBASIC8.89□□□□□ -0.99
SENP3Q9H4L4 OR11G2-202ENST00000641682 3786 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
SENP3Q9H4L4 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC8.89□□□□□ -0.99
SENP3Q9H4L4 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
SENP3Q9H4L4 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
SENP3Q9H4L4 OPALIN-202ENST00000393870 3578 ntTSL 3 BASIC8.88□□□□□ -0.99
SENP3Q9H4L4 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
SENP3Q9H4L4 Y_RNA.253-201ENST00000364562 112 ntBASIC8.88□□□□□ -0.99
SENP3Q9H4L4 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
SENP3Q9H4L4 RNU6-629P-201ENST00000384061 103 ntBASIC8.88□□□□□ -0.99
SENP3Q9H4L4 MIR153-1-201ENST00000384914 90 ntBASIC8.88□□□□□ -0.99
SENP3Q9H4L4 SNORD77B-201ENST00000391112 67 ntBASIC8.88□□□□□ -0.99
SENP3Q9H4L4 AC245096.1-201ENST00000413104 546 ntBASIC8.88□□□□□ -0.99
SENP3Q9H4L4 snoU13.14-201ENST00000459372 104 ntBASIC8.88□□□□□ -0.99
SENP3Q9H4L4 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC8.88□□□□□ -0.99
SENP3Q9H4L4 RNU6-1098P-201ENST00000516772 96 ntBASIC8.88□□□□□ -0.99
SENP3Q9H4L4 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
SENP3Q9H4L4 AC021739.1-201ENST00000559631 174 ntBASIC8.88□□□□□ -0.99
SENP3Q9H4L4 IGLCOR22-2-201ENST00000605398 313 ntBASIC8.88□□□□□ -0.99
SENP3Q9H4L4 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
SENP3Q9H4L4 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC8.88□□□□□ -0.99
SENP3Q9H4L4 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC8.88□□□□□ -0.99
SENP3Q9H4L4 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
SENP3Q9H4L4 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC8.88□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms