Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC006020.1-201ENST00000420179 1854 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 SNORA14A-201ENST00000364773 135 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 RNU6-116P-201ENST00000384042 109 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 RNU6-550P-201ENST00000391057 101 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 FCF1P9-201ENST00000412546 282 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 ZNF863P-201ENST00000426746 417 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC093151.1-201ENST00000427711 313 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 RPL36AP53-201ENST00000432891 316 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 MTND3P21-201ENST00000433774 331 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 SNRPEP9-201ENST00000436794 238 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC073415.1-201ENST00000449240 153 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 AL356010.1-201ENST00000456364 102 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 RNU7-63P-201ENST00000459054 62 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 RPS29P20-201ENST00000489592 171 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 RN7SKP219-201ENST00000516825 296 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 MIR3200-201ENST00000580767 85 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 AL160281.1-201ENST00000605307 311 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC093788.1-201ENST00000609356 927 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC107294.1-201ENST00000609524 467 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC090517.2-201ENST00000614966 680 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 AP001486.3-201ENST00000615334 372 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC026585.1-201ENST00000619582 524 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 AC010338.1-201ENST00000621823 717 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 MIR3651-201ENST00000630427 90 ntBASIC2.67□□□□□ -1.98
NKX3-1Q99801 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
NKX3-1Q99801 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
NKX3-1Q99801 RNU6-884P-201ENST00000363889 107 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 RNU4-12P-201ENST00000365233 139 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 RNU6-996P-201ENST00000365438 107 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 SNORA75B-201ENST00000384053 137 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 MIR181A1-201ENST00000385026 110 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 SNORD115-47-201ENST00000391226 86 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 RNU6-903P-201ENST00000391270 109 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 RNA5SP111-201ENST00000411386 101 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 AL353678.1-201ENST00000422735 741 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 AL160275.3-201ENST00000423876 471 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 RPS3AP44-201ENST00000425466 790 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 AC016691.1-201ENST00000441321 413 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 MTND1P18-201ENST00000448191 573 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 AC110794.1-201ENST00000505816 425 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 SNORA40.12-201ENST00000516329 111 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 RNU6-835P-201ENST00000516974 104 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 RNA5SP503-201ENST00000517047 117 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 RN7SKP57-201ENST00000517248 293 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 MTND1P5-201ENST00000517906 940 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 OR5AQ1P-201ENST00000527596 927 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 OR5BN1P-201ENST00000532955 829 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 AC025678.1-201ENST00000567861 338 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 MIR5680-201ENST00000577577 84 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 MIR4703-201ENST00000577728 79 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 BNIP3P30-201ENST00000601184 574 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 AC107304.1-201ENST00000604229 296 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 AC007621.1-201ENST00000604544 437 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 AL359547.2-201ENST00000615810 418 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
NKX3-1Q99801 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.66□□□□□ -1.98
NKX3-1Q99801 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
NKX3-1Q99801 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.65□□□□□ -1.98
NKX3-1Q99801 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.65□□□□□ -1.98
NKX3-1Q99801 Y_RNA.38-201ENST00000362617 102 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 RNU6-1287P-201ENST00000362914 107 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 SNORA69-201ENST00000383895 132 ntBASIC2.65□□□□□ -1.99
NKX3-1Q99801 RNU6-1060P-201ENST00000384664 107 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms