Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC091965.2-201ENST00000512324 613 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 RNU6-410P-201ENST00000517006 107 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 SCARNA3-201ENST00000517097 143 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 RANP3-201ENST00000530970 276 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.46□□□□□ -2.02
FOXA2Q9Y261 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.46□□□□□ -2.02
FOXA2Q9Y261 MIR5195-201ENST00000583555 115 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 MIR548AC-201ENST00000585049 88 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.46□□□□□ -2.02
FOXA2Q9Y261 AC008121.1-201ENST00000603244 268 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 AL022154.1-201ENST00000604698 785 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 AL670379.4-201ENST00000605279 254 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 ATP1B3P1-201ENST00000605365 821 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 AL021997.1-201ENST00000605757 193 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 AC100793.4-201ENST00000613683 429 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 AC010678.1-201ENST00000614118 713 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 AL449363.1-201ENST00000617815 186 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 U6.42-201ENST00000618440 107 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.46□□□□□ -2.02
FOXA2Q9Y261 AC025034.2-201ENST00000623264 286 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 AC018692.3-201ENST00000623929 123 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 AC097520.1-201ENST00000624435 385 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 MIR622-201ENST00000638396 96 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.46□□□□□ -2.02
FOXA2Q9Y261 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.46□□□□□ -2.02
FOXA2Q9Y261 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.46□□□□□ -2.02
FOXA2Q9Y261 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.46□□□□□ -2.02
FOXA2Q9Y261 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.46□□□□□ -2.02
FOXA2Q9Y261 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
FOXA2Q9Y261 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.46□□□□□ -2.02
FOXA2Q9Y261 CKAP2P1-201ENST00000555477 2049 ntBASIC2.46□□□□□ -2.02
FOXA2Q9Y261 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AL109809.4-201ENST00000603520 2185 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 MIR412-201ENST00000362142 91 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 RNU6-61P-201ENST00000365528 109 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 SNORD116-8-201ENST00000384365 95 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 RNU6-297P-201ENST00000384636 107 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 MIR1302-8-201ENST00000408342 128 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 RN7SKP123-201ENST00000410732 291 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 RN7SKP142-201ENST00000411236 328 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 RPL31P35-201ENST00000431058 377 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 RPS20P5-201ENST00000434808 360 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 RPS15AP9-201ENST00000439856 381 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AC079781.2-201ENST00000446424 169 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AC126389.1-201ENST00000477436 290 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AP004217.1-201ENST00000480579 346 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AC103975.1-201ENST00000482506 483 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AC091826.1-201ENST00000514065 313 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 RNA5SP112-201ENST00000515937 99 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 RN7SKP272-201ENST00000516988 232 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AC090572.1-201ENST00000519251 160 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AC109329.2-201ENST00000519658 482 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 PSMA2P1-201ENST00000526365 646 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AC106782.4-201ENST00000568264 210 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AC098848.2-201ENST00000588023 330 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 AC138649.3-201ENST00000622154 254 ntBASIC2.45□□□□□ -2.02
FOXA2Q9Y261 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.45□□□□□ -2.02
FOXA2Q9Y261 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.44□□□□□ -2.02
FOXA2Q9Y261 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.44□□□□□ -2.02
FOXA2Q9Y261 AC093536.2-201ENST00000565257 1406 ntBASIC2.44□□□□□ -2.02
FOXA2Q9Y261 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA2Q9Y261 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.44□□□□□ -2.02
FOXA2Q9Y261 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA2Q9Y261 AC073325.2-201ENST00000339545 159 ntBASIC2.44□□□□□ -2.02
FOXA2Q9Y261 RNU6-486P-201ENST00000363116 107 ntBASIC2.44□□□□□ -2.02
FOXA2Q9Y261 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
FOXA2Q9Y261 RNU6-220P-201ENST00000390919 107 ntBASIC2.44□□□□□ -2.02
FOXA2Q9Y261 Y_RNA.623-201ENST00000411128 95 ntBASIC2.44□□□□□ -2.02
FOXA2Q9Y261 RNU6-387P-201ENST00000411331 105 ntBASIC2.44□□□□□ -2.02
FOXA2Q9Y261 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.44□□□□□ -2.02
FOXA2Q9Y261 C1DP2-201ENST00000418167 426 ntBASIC2.44□□□□□ -2.02
FOXA2Q9Y261 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.44□□□□□ -2.02
FOXA2Q9Y261 BX276092.3-201ENST00000424182 230 ntBASIC2.44□□□□□ -2.02
FOXA2Q9Y261 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.44□□□□□ -2.02
FOXA2Q9Y261 MICF-203ENST00000432679 129 ntBASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms