Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VPS28Q9UK41 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VPS28Q9UK41 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS28Q9UK41 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.07□□□□□ -1.92
VPS28Q9UK41 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 AC024940.5-201ENST00000622889 474 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 AC025034.2-201ENST00000623264 286 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 AC084035.1-201ENST00000634543 607 ntBASIC3.07□□□□□ -1.92
VPS28Q9UK41 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
VPS28Q9UK41 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
VPS28Q9UK41 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
VPS28Q9UK41 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS28Q9UK41 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
VPS28Q9UK41 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
VPS28Q9UK41 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
VPS28Q9UK41 SNORA68.1-201ENST00000364537 132 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 RNU6-61P-201ENST00000365528 109 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 RNU6-108P-201ENST00000365558 107 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 Y_RNA.553-201ENST00000384670 102 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 SNORA40C-201ENST00000391285 128 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 RNU6-387P-201ENST00000411331 105 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 PIGFP2-201ENST00000421400 651 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 AC007560.1-201ENST00000426912 237 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 AC133104.1-201ENST00000429100 218 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS28Q9UK41 MTATP6P16-201ENST00000434543 526 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 MTCO2P16-201ENST00000436962 677 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 AL513043.1-201ENST00000439124 535 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 AL031667.1-201ENST00000440222 725 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 AL078601.1-201ENST00000444542 271 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 UBBP3-201ENST00000445497 241 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 MTCYBP1-201ENST00000454315 1119 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
VPS28Q9UK41 KLF3P2-201ENST00000465138 268 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS28Q9UK41 AC010424.1-201ENST00000506336 297 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS28Q9UK41 AC022447.1-201ENST00000515358 464 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS28Q9UK41 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.06□□□□□ -1.92
VPS28Q9UK41 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS28Q9UK41 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS28Q9UK41 AC012213.3-201ENST00000577199 777 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS28Q9UK41 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS28Q9UK41 AC068790.2-201ENST00000602601 557 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 AL391813.1-201ENST00000603098 260 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 AL022154.1-201ENST00000604698 785 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 AC093732.2-201ENST00000607950 274 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 AC007318.2-201ENST00000620999 243 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 AL157786.1-207ENST00000627771 695 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
VPS28Q9UK41 AL365361.1-201ENST00000566942 3481 ntBASIC3.06□□□□□ -1.92
VPS28Q9UK41 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
VPS28Q9UK41 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
VPS28Q9UK41 RNU6-1097P-201ENST00000363586 107 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 SNORA44-201ENST00000384584 132 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 CISD1P1-201ENST00000393907 327 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 AL356057.2-201ENST00000403318 432 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 AL513475.1-201ENST00000406602 315 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 OR51A5P-201ENST00000415429 942 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 AL160275.3-201ENST00000423876 471 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 AL161651.1-201ENST00000440882 223 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.05□□□□□ -1.92
VPS28Q9UK41 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS28Q9UK41 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS28Q9UK41 RNU5F-8P-201ENST00000515941 111 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 SCARNA11.3-201ENST00000517276 130 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 MTCYBP20-201ENST00000524239 1129 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS28Q9UK41 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS28Q9UK41 AL121821.2-201ENST00000556081 394 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 MIR3913-1-201ENST00000577744 102 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 AC006566.1-201ENST00000608943 513 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 AC069234.5-201ENST00000611056 416 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 AL589743.7-201ENST00000612637 233 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 AC010678.1-201ENST00000614118 713 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.05□□□□□ -1.92
VPS28Q9UK41 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.05□□□□□ -1.92
VPS28Q9UK41 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS28Q9UK41 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.05□□□□□ -1.92
VPS28Q9UK41 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
VPS28Q9UK41 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS28Q9UK41 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS28Q9UK41 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
VPS28Q9UK41 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS28Q9UK41 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
VPS28Q9UK41 MTND5P17-201ENST00000418405 1603 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
VPS28Q9UK41 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
VPS28Q9UK41 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS28Q9UK41 Y_RNA.367-201ENST00000365544 101 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 SNORA75-201ENST00000384158 137 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 SNORD116-1-201ENST00000384335 95 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 RNU6-348P-201ENST00000384386 107 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 MIR627-201ENST00000384979 97 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 RPL17P50-201ENST00000396131 546 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms