Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 RNU6-687P-201ENST00000516443 89 ntBASIC8.97□□□□□ -0.97
SENP3Q9H4L4 MIR4512-201ENST00000583257 77 ntBASIC8.97□□□□□ -0.97
SENP3Q9H4L4 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC8.97□□□□□ -0.97
SENP3Q9H4L4 AL023881.1-201ENST00000621088 301 ntBASIC8.97□□□□□ -0.97
SENP3Q9H4L4 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC8.97□□□□□ -0.97
SENP3Q9H4L4 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
SENP3Q9H4L4 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
SENP3Q9H4L4 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC8.97□□□□□ -0.97
SENP3Q9H4L4 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
SENP3Q9H4L4 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC8.97□□□□□ -0.97
SENP3Q9H4L4 CDH18-207ENST00000507958 3542 ntAPPRIS P1 TSL 2 BASIC8.97□□□□□ -0.97
SENP3Q9H4L4 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
SENP3Q9H4L4 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC8.96□□□□□ -0.97
SENP3Q9H4L4 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
SENP3Q9H4L4 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
SENP3Q9H4L4 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
SENP3Q9H4L4 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
SENP3Q9H4L4 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
SENP3Q9H4L4 SNORA12-201ENST00000391162 147 ntBASIC8.96□□□□□ -0.98
SENP3Q9H4L4 RN7SL705P-201ENST00000481678 294 ntBASIC8.96□□□□□ -0.98
SENP3Q9H4L4 RPS27AP10-201ENST00000496103 208 ntBASIC8.96□□□□□ -0.98
SENP3Q9H4L4 SNORD36C-201ENST00000516733 66 ntBASIC8.96□□□□□ -0.98
SENP3Q9H4L4 AL162431.4-201ENST00000604674 411 ntBASIC8.96□□□□□ -0.98
SENP3Q9H4L4 RPL17P51-201ENST00000605218 238 ntBASIC8.96□□□□□ -0.98
SENP3Q9H4L4 AC245014.3-201ENST00000618589 347 ntBASIC8.96□□□□□ -0.98
SENP3Q9H4L4 AC120057.5-201ENST00000623840 154 ntBASIC8.96□□□□□ -0.98
SENP3Q9H4L4 CSDE1-214ENST00000530886 3459 ntTSL 5 BASIC8.96□□□□□ -0.98
SENP3Q9H4L4 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
SENP3Q9H4L4 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC8.96□□□□□ -0.98
SENP3Q9H4L4 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
SENP3Q9H4L4 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
SENP3Q9H4L4 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
SENP3Q9H4L4 SMG1P7-201ENST00000565246 2704 ntBASIC8.96□□□□□ -0.98
SENP3Q9H4L4 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
SENP3Q9H4L4 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
SENP3Q9H4L4 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
SENP3Q9H4L4 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
SENP3Q9H4L4 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
SENP3Q9H4L4 RNU1-22P-201ENST00000363334 158 ntBASIC8.95□□□□□ -0.98
SENP3Q9H4L4 RNU6-1163P-201ENST00000364516 107 ntBASIC8.95□□□□□ -0.98
SENP3Q9H4L4 MIR199B-201ENST00000384849 110 ntBASIC8.95□□□□□ -0.98
SENP3Q9H4L4 RNU7-153P-201ENST00000516455 62 ntBASIC8.95□□□□□ -0.98
SENP3Q9H4L4 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
SENP3Q9H4L4 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC8.95□□□□□ -0.98
SENP3Q9H4L4 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
SENP3Q9H4L4 AL139811.1-201ENST00000424779 2299 ntBASIC8.94□□□□□ -0.98
SENP3Q9H4L4 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
SENP3Q9H4L4 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC8.94□□□□□ -0.98
SENP3Q9H4L4 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC8.94□□□□□ -0.98
SENP3Q9H4L4 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC8.94□□□□□ -0.98
SENP3Q9H4L4 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
SENP3Q9H4L4 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
SENP3Q9H4L4 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC8.94□□□□□ -0.98
SENP3Q9H4L4 AL590240.1-201ENST00000334118 313 ntBASIC8.94□□□□□ -0.98
SENP3Q9H4L4 RNU6-178P-201ENST00000384631 104 ntBASIC8.94□□□□□ -0.98
SENP3Q9H4L4 MIR1203-201ENST00000408812 85 ntBASIC8.94□□□□□ -0.98
SENP3Q9H4L4 RN7SKP200-201ENST00000410564 320 ntBASIC8.94□□□□□ -0.98
SENP3Q9H4L4 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC8.94□□□□□ -0.98
SENP3Q9H4L4 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC8.94□□□□□ -0.98
SENP3Q9H4L4 HMGN2P10-201ENST00000448085 265 ntBASIC8.94□□□□□ -0.98
SENP3Q9H4L4 RPS3P1-201ENST00000456781 192 ntBASIC8.94□□□□□ -0.98
SENP3Q9H4L4 RPS29P21-201ENST00000496272 170 ntBASIC8.94□□□□□ -0.98
SENP3Q9H4L4 RNA5SP228-201ENST00000516232 133 ntBASIC8.94□□□□□ -0.98
SENP3Q9H4L4 MIR4716-201ENST00000579628 84 ntBASIC8.94□□□□□ -0.98
SENP3Q9H4L4 AL359075.3-201ENST00000613288 217 ntBASIC8.94□□□□□ -0.98
SENP3Q9H4L4 AC131009.3-201ENST00000621809 287 ntBASIC8.94□□□□□ -0.98
SENP3Q9H4L4 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC8.94□□□□□ -0.98
SENP3Q9H4L4 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
SENP3Q9H4L4 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC8.94□□□□□ -0.98
SENP3Q9H4L4 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC8.94□□□□□ -0.98
SENP3Q9H4L4 LINC00683-202ENST00000579781 3510 ntTSL 2 BASIC8.93□□□□□ -0.98
SENP3Q9H4L4 MR1-208ENST00000614012 7860 ntAPPRIS P1 TSL 5 BASIC8.93□□□□□ -0.98
SENP3Q9H4L4 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
SENP3Q9H4L4 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
SENP3Q9H4L4 RNU1-46P-201ENST00000384425 164 ntBASIC8.93□□□□□ -0.98
SENP3Q9H4L4 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC8.93□□□□□ -0.98
SENP3Q9H4L4 RPS23P2-201ENST00000463671 415 ntBASIC8.93□□□□□ -0.98
SENP3Q9H4L4 RNU6-70P-201ENST00000516438 60 ntBASIC8.93□□□□□ -0.98
SENP3Q9H4L4 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC8.93□□□□□ -0.98
SENP3Q9H4L4 AC096577.2-201ENST00000611455 153 ntBASIC8.93□□□□□ -0.98
SENP3Q9H4L4 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC8.93□□□□□ -0.98
SENP3Q9H4L4 AL161901.1-201ENST00000624954 3425 ntBASIC8.93□□□□□ -0.98
SENP3Q9H4L4 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
SENP3Q9H4L4 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC8.92□□□□□ -0.98
SENP3Q9H4L4 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC8.92□□□□□ -0.98
SENP3Q9H4L4 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC8.92□□□□□ -0.98
SENP3Q9H4L4 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
SENP3Q9H4L4 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC8.92□□□□□ -0.98
SENP3Q9H4L4 AL033543.1-201ENST00000623440 13454 ntBASIC8.92□□□□□ -0.98
SENP3Q9H4L4 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
SENP3Q9H4L4 Y_RNA.37-201ENST00000362606 108 ntBASIC8.92□□□□□ -0.98
SENP3Q9H4L4 MIR1283-1-201ENST00000408494 87 ntBASIC8.92□□□□□ -0.98
SENP3Q9H4L4 AC010285.1-201ENST00000470580 392 ntBASIC8.92□□□□□ -0.98
SENP3Q9H4L4 KRTAP13-6P-201ENST00000508999 371 ntBASIC8.92□□□□□ -0.98
SENP3Q9H4L4 HMSD-204ENST00000526932 162 ntTSL 3 BASIC8.92□□□□□ -0.98
SENP3Q9H4L4 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
SENP3Q9H4L4 AC107027.3-201ENST00000565095 3473 ntBASIC8.92□□□□□ -0.98
SENP3Q9H4L4 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
SENP3Q9H4L4 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC8.91□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms