Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AL451142.2-201ENST00000429076 2090 ntBASIC5.08□□□□□ -1.6
NPAS3Q8IXF0 AC026523.2-201ENST00000625039 7739 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 Y_RNA.35-201ENST00000362601 101 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 RNA5SP391-201ENST00000363456 119 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 Y_RNA.337-201ENST00000365312 102 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 RNU6-573P-201ENST00000383938 106 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 RNU6-578P-201ENST00000390980 103 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 SNORA40.5-201ENST00000391061 128 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 AC006461.1-201ENST00000412637 326 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 AC016831.4-201ENST00000438302 307 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 AC000111.2-201ENST00000448200 210 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 AL691482.1-201ENST00000453255 87 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 RPS29P27-201ENST00000463711 170 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 AP000870.1-201ENST00000472927 406 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 MIR892C-201ENST00000516410 77 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 AC027369.5-201ENST00000533838 755 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 AC040958.1-201ENST00000561102 201 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 AC010928.2-201ENST00000588017 287 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 AC138965.3-201ENST00000623875 498 ntBASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NPAS3Q8IXF0 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 RNU6-1272P-201ENST00000362776 107 ntBASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 RNU6-1243P-201ENST00000364028 107 ntBASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 SNORA25.7-201ENST00000364375 127 ntBASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 RNU6-817P-201ENST00000391083 104 ntBASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 RPL23AP1-201ENST00000428990 471 ntBASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 RPS17P2-201ENST00000461663 408 ntBASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 RNU6-772P-201ENST00000516042 105 ntBASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 PARP1P2-201ENST00000556806 195 ntBASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 MIR4277-201ENST00000578298 84 ntBASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 LARP7P3-201ENST00000579888 337 ntBASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 MIR4744-201ENST00000581563 82 ntBASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 AC022726.1-201ENST00000587475 207 ntBASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.06□□□□□ -1.6
NPAS3Q8IXF0 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 RNU6-1131P-201ENST00000364955 107 ntBASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 SNORD116-21-201ENST00000384507 92 ntBASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 MIR129-1-201ENST00000384972 72 ntBASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 U3.32-201ENST00000408116 212 ntBASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 AL160275.2-201ENST00000412010 394 ntBASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 AL592148.1-201ENST00000413568 445 ntBASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 LAMTOR3P1-201ENST00000428620 370 ntBASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 AL110118.1-201ENST00000553543 400 ntBASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 AC060766.3-201ENST00000591442 263 ntBASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 SRGNP1-201ENST00000603392 451 ntBASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 AL022401.1-201ENST00000619498 108 ntBASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 AC092079.1-201ENST00000558620 1985 ntBASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
NPAS3Q8IXF0 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.04□□□□□ -1.6
NPAS3Q8IXF0 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.04□□□□□ -1.6
NPAS3Q8IXF0 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
NPAS3Q8IXF0 AC018555.1-201ENST00000567548 1980 ntBASIC5.04□□□□□ -1.6
NPAS3Q8IXF0 AF127577.6-201ENST00000623352 2191 ntBASIC5.04□□□□□ -1.6
NPAS3Q8IXF0 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
NPAS3Q8IXF0 AL031595.2-201ENST00000624215 19071 ntBASIC5.04□□□□□ -1.6
NPAS3Q8IXF0 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.04□□□□□ -1.6
NPAS3Q8IXF0 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.04□□□□□ -1.6
NPAS3Q8IXF0 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.04□□□□□ -1.6
NPAS3Q8IXF0 RNY1P11-201ENST00000363759 113 ntBASIC5.04□□□□□ -1.6
NPAS3Q8IXF0 SNORD113.2-201ENST00000364166 89 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms