Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 RNU6-451P-201ENST00000362921 107 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 RNY3P3-201ENST00000363816 102 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 SNORA62.1-201ENST00000364287 154 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 RNU4-48P-201ENST00000365559 182 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 MIR454-201ENST00000390180 115 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AC125238.1-201ENST00000448842 249 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 HMGB3P8-201ENST00000449709 577 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 RPS24P6-201ENST00000452670 400 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 RPS29P15-201ENST00000458329 171 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 MRPS17P3-201ENST00000465453 385 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 RPS27AP1-201ENST00000475545 471 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 RPS29P26-201ENST00000477483 171 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AC116562.3-201ENST00000506136 177 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AC074344.1-201ENST00000512823 224 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AC010265.1-201ENST00000513509 211 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 RNU6-390P-201ENST00000516259 103 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 RN7SKP289-201ENST00000517244 295 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AC068587.5-201ENST00000528506 175 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AC118273.2-201ENST00000532092 465 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AC005951.2-201ENST00000576282 495 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 SNORD84-203ENST00000584275 78 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AL035413.2-201ENST00000604801 525 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SIX4Q9UIU6 AC092326.2-201ENST00000624772 1561 ntBASIC3.21□□□□□ -1.9
SIX4Q9UIU6 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AL079305.1-201ENST00000623159 3008 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 RNU6-867P-201ENST00000364956 107 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 SMIM11P1-201ENST00000369586 178 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 RNU6-606P-201ENST00000384721 111 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 SNORA46-201ENST00000384762 135 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 EI24P2-201ENST00000397776 1076 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 FGF7P8-201ENST00000402994 292 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 TXNP7-201ENST00000406296 293 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 RNU6-1068P-201ENST00000410958 103 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 OR51A5P-201ENST00000415429 942 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AL139413.1-201ENST00000421309 217 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 SEPT14P3-201ENST00000439401 183 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AL732372.2-207ENST00000445840 183 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 SEPT14P2-201ENST00000453405 183 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AL356010.1-201ENST00000456364 102 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 snoU13.24-201ENST00000458998 104 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 SNORD97-201ENST00000459187 142 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 RNU6-261P-201ENST00000459506 102 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AC126389.1-201ENST00000477436 290 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AC012181.1-201ENST00000479895 423 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 SEPT14P4-201ENST00000513445 186 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 RNA5SP401-201ENST00000515920 127 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 ERHP1-201ENST00000523006 310 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 FO082796.1-201ENST00000523795 183 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 OR4H12P-201ENST00000556269 907 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AC055876.1-202ENST00000567053 138 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AC024619.4-201ENST00000580924 316 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AP001029.3-201ENST00000588063 596 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 RMST_3.1-201ENST00000611651 109 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AL354950.2-201ENST00000617939 290 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 DUXAP9-208ENST00000622815 614 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AC024940.5-201ENST00000622889 474 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 CKAP2P1-201ENST00000555477 2049 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AC110774.1-201ENST00000623567 2018 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AC006020.1-201ENST00000420179 1854 ntBASIC3.2□□□□□ -1.9
SIX4Q9UIU6 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SIX4Q9UIU6 AC073343.1-201ENST00000328239 651 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms