Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AL512605.2-201ENST00000592972 256 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 AL139395.1-201ENST00000603662 160 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 U3.53-201ENST00000628922 216 ntBASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
UBE3DQ7Z6J8 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 NCAPGP1-201ENST00000505112 1814 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 SNORD27-201ENST00000363981 72 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 Y_RNA.245-201ENST00000364493 95 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 RNVU1-6-201ENST00000364688 164 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 RNU6-338P-201ENST00000383888 105 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 Y_RNA.439-201ENST00000384119 94 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 Y_RNA.539-201ENST00000384635 107 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 SNORD115-46-201ENST00000390982 71 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 EIF4A1P3-201ENST00000411521 244 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 Z85995.1-201ENST00000415547 335 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 AC104332.1-201ENST00000440471 797 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 AC010326.1-201ENST00000462726 602 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 AC087190.1-201ENST00000484462 480 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 AC107032.1-201ENST00000485945 480 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 AC026784.1-201ENST00000507986 352 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 AL359273.1-201ENST00000510918 627 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 RN7SKP46-201ENST00000515942 234 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 RNA5SP446-201ENST00000515955 82 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 RNA5SP464-201ENST00000516251 108 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 IGKV1-32-201ENST00000519290 311 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 RN7SL690P-201ENST00000582087 240 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 SRGNP1-201ENST00000603392 451 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 LINC02555-201ENST00000563933 1951 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 MAPK10-286ENST00000641208 8747 ntBASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
UBE3DQ7Z6J8 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 RNU6-227P-201ENST00000362865 103 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 RNU6-280P-201ENST00000364145 104 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 RNA5SP151-201ENST00000365632 117 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 SNORD96B-201ENST00000386148 79 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 RPS29P13-201ENST00000402041 169 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 RN7SKP106-201ENST00000410832 272 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 AP000275.1-201ENST00000411943 390 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 AL138752.1-201ENST00000452964 351 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 PRELID3BP1-201ENST00000457142 540 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 AK3P2-201ENST00000507976 429 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 AC093023.1-201ENST00000547375 507 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 AC005476.1-201ENST00000554427 397 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 MIR4270-201ENST00000581799 70 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 AC010201.1-201ENST00000605051 540 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 AC005046.1-201ENST00000608515 625 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 AC100827.5-201ENST00000615883 426 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 MIR376A1-201ENST00000616574 68 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 MIR7703-201ENST00000620784 77 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 U2.22-201ENST00000636441 106 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 AC126323.6-202ENST00000568092 3511 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 AP001273.1-201ENST00000624493 3152 ntBASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
UBE3DQ7Z6J8 ZNF137P-201ENST00000456718 1920 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 OR51H2P-202ENST00000641424 3046 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 SCN1A-220ENST00000641603 12506 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 RN7SKP103-201ENST00000363848 320 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 Y_RNA.237-201ENST00000364439 102 ntBASIC4.36□□□□□ -1.71
UBE3DQ7Z6J8 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 187.2 ms