Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC016957.1-201ENST00000534895 309 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.24□□□□□ -1.89
COL28A1Q2UY09 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC3.24□□□□□ -1.89
COL28A1Q2UY09 AMZ2P1-203ENST00000565833 850 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 MIR4435-1-201ENST00000582552 80 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.24□□□□□ -1.89
COL28A1Q2UY09 AC025449.1-201ENST00000603896 529 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 AC073657.2-201ENST00000605661 303 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 AL021997.1-201ENST00000605757 193 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL28A1Q2UY09 AL138880.2-201ENST00000616214 239 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 AC093648.1-201ENST00000623546 606 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 MIR6863-201ENST00000636112 90 ntBASIC3.24□□□□□ -1.89
COL28A1Q2UY09 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL28A1Q2UY09 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 Y_RNA.6-201ENST00000362350 114 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 RNU6-179P-201ENST00000363350 107 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 RNU6-61P-201ENST00000365528 109 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 SNORA54-201ENST00000384281 123 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 AF274854.1-201ENST00000413236 615 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 ISCA1P1-201ENST00000426679 387 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 AL512844.2-201ENST00000433990 593 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 AC092573.2-201ENST00000434546 243 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 RPL23AP20-201ENST00000447965 421 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 RPL39P36-201ENST00000490784 156 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 RNA5SP356-201ENST00000515972 94 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 RNA5SP380-201ENST00000517190 98 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 MIR4474-201ENST00000579189 78 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 MIR3162-201ENST00000581818 82 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 AC098826.3-201ENST00000603823 466 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 AL161798.1-201ENST00000604630 131 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 Z84480.1-201ENST00000605131 311 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 AP001330.5-201ENST00000607176 411 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 U4.5-201ENST00000617137 123 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 uc_338.11-201ENST00000619132 160 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 AC018692.3-201ENST00000623929 123 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 OR5H6-203ENST00000642105 978 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 AC103710.2-202ENST00000641454 2853 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 AL359693.1-201ENST00000614959 2407 ntBASIC3.23□□□□□ -1.89
COL28A1Q2UY09 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
COL28A1Q2UY09 FAM35BP-202ENST00000497389 3337 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL28A1Q2UY09 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.22□□□□□ -1.89
COL28A1Q2UY09 UBE2L2-201ENST00000254302 429 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 FRG1CP-201ENST00000358464 769 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 RNU6-190P-201ENST00000384154 102 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 SNORA24.1-201ENST00000384401 135 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL28A1Q2UY09 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL28A1Q2UY09 RPS12P24-201ENST00000412619 387 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 OR51A5P-201ENST00000415429 942 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 AC114491.1-201ENST00000416095 246 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 SDCBPP3-201ENST00000419629 891 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.22□□□□□ -1.89
COL28A1Q2UY09 OR2B8P-201ENST00000432841 938 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.22□□□□□ -1.89
COL28A1Q2UY09 RPS15AP9-201ENST00000439856 381 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 RPS24P13-201ENST00000442520 397 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.22□□□□□ -1.89
COL28A1Q2UY09 RPL37P6-201ENST00000460682 294 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 RN7SL594P-201ENST00000470590 287 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.22□□□□□ -1.89
COL28A1Q2UY09 AC108078.2-201ENST00000510750 236 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC3.22□□□□□ -1.89
COL28A1Q2UY09 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.22□□□□□ -1.89
COL28A1Q2UY09 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.22□□□□□ -1.89
COL28A1Q2UY09 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC3.22□□□□□ -1.89
COL28A1Q2UY09 AC012507.3-201ENST00000603556 477 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 AC008962.1-201ENST00000605729 304 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 AC068831.7-201ENST00000616954 363 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
COL28A1Q2UY09 ZNF680P1-201ENST00000436625 1469 ntBASIC3.22□□□□□ -1.89
COL28A1Q2UY09 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
COL28A1Q2UY09 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AL136360.1-201ENST00000503377 1900 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL28A1Q2UY09 Y_RNA.245-201ENST00000364493 95 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
COL28A1Q2UY09 RNU6-217P-201ENST00000384164 104 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 Y_RNA.481-201ENST00000384373 102 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
COL28A1Q2UY09 Y_RNA.599-201ENST00000410489 109 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 138.4 ms