Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
HPS3Q969F9 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HPS3Q969F9 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.96□□□□□ -1.78
HPS3Q969F9 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.96□□□□□ -1.78
HPS3Q969F9 RPS4XP5-202ENST00000449995 1334 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.95□□□□□ -1.78
HPS3Q969F9 AF117829.1-206ENST00000621883 3802 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
HPS3Q969F9 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HPS3Q969F9 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HPS3Q969F9 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HPS3Q969F9 CASC19-280ENST00000642102 1351 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 SNORA71.3-201ENST00000362582 128 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 Y_RNA.88-201ENST00000363029 99 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 RNU6-512P-201ENST00000364438 103 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 RNU6-876P-201ENST00000391295 104 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 RPL21P17-201ENST00000397467 475 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 AL139397.2-201ENST00000404529 772 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 RN7SKP53-201ENST00000411337 315 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 AC007390.1-201ENST00000415722 356 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.95□□□□□ -1.78
HPS3Q969F9 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.95□□□□□ -1.78
HPS3Q969F9 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.95□□□□□ -1.78
HPS3Q969F9 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.95□□□□□ -1.78
HPS3Q969F9 MTND3P10-201ENST00000450967 341 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.95□□□□□ -1.78
HPS3Q969F9 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.95□□□□□ -1.78
HPS3Q969F9 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.95□□□□□ -1.78
HPS3Q969F9 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.95□□□□□ -1.78
HPS3Q969F9 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.95□□□□□ -1.78
HPS3Q969F9 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.95□□□□□ -1.78
HPS3Q969F9 RNU6-914P-201ENST00000516749 109 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 RNA5SP471-201ENST00000516971 106 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.95□□□□□ -1.78
HPS3Q969F9 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.95□□□□□ -1.78
HPS3Q969F9 AL137161.1-201ENST00000532231 390 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 AL138976.2-201ENST00000563989 694 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.95□□□□□ -1.78
HPS3Q969F9 AC010525.2-201ENST00000590920 195 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 AL161798.1-201ENST00000604630 131 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 SNORA51-201ENST00000606420 132 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 MIR15A-201ENST00000607334 83 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 RMST_3.1-201ENST00000611651 109 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.95□□□□□ -1.78
HPS3Q969F9 uc_338.34-201ENST00000617467 174 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 XIST_intron.1-201ENST00000619444 68 ntBASIC3.95□□□□□ -1.78
HPS3Q969F9 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.95□□□□□ -1.78
HPS3Q969F9 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.95□□□□□ -1.78
HPS3Q969F9 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.95□□□□□ -1.78
HPS3Q969F9 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
HPS3Q969F9 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.94□□□□□ -1.78
HPS3Q969F9 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HPS3Q969F9 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HPS3Q969F9 RNU4-66P-201ENST00000365199 138 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
HPS3Q969F9 MIR301A-201ENST00000385261 86 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HPS3Q969F9 UBE2V1P2-201ENST00000397758 440 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 ATP5A1P2-201ENST00000412323 255 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 SYF2P2-201ENST00000417620 583 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.94□□□□□ -1.78
HPS3Q969F9 AL160275.3-201ENST00000423876 471 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.94□□□□□ -1.78
HPS3Q969F9 YME1L1P1-201ENST00000429435 297 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.94□□□□□ -1.78
HPS3Q969F9 GPM6BP2-201ENST00000432046 144 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 GOT2P5-201ENST00000433995 546 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.94□□□□□ -1.78
HPS3Q969F9 HSPD1P21-201ENST00000436541 245 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 Z82210.1-201ENST00000440037 231 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 GPM6BP1-201ENST00000446387 144 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 RNU7-180P-201ENST00000459240 63 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 KC877373.1-201ENST00000479066 408 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.94□□□□□ -1.78
HPS3Q969F9 AC104619.4-201ENST00000510773 249 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.94□□□□□ -1.78
HPS3Q969F9 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.94□□□□□ -1.78
HPS3Q969F9 BNIP3P6-201ENST00000549284 499 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 SYF2P1-201ENST00000550658 413 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC3.94□□□□□ -1.78
HPS3Q969F9 AC106782.4-201ENST00000568264 210 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.94□□□□□ -1.78
HPS3Q969F9 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.94□□□□□ -1.78
HPS3Q969F9 AL390240.1-201ENST00000612950 384 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 AC084757.4-201ENST00000616350 526 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 AL008636.1-201ENST00000625038 1018 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 FAM35BP-202ENST00000497389 3337 ntBASIC3.94□□□□□ -1.78
HPS3Q969F9 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.93□□□□□ -1.78
HPS3Q969F9 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.93□□□□□ -1.78
HPS3Q969F9 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HPS3Q969F9 CUL1P1-201ENST00000509510 2425 ntBASIC3.93□□□□□ -1.78
HPS3Q969F9 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.93□□□□□ -1.78
HPS3Q969F9 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.93□□□□□ -1.78
HPS3Q969F9 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HPS3Q969F9 FRG1CP-201ENST00000358464 769 ntBASIC3.93□□□□□ -1.78
HPS3Q969F9 SNORA63.1-201ENST00000362493 131 ntBASIC3.93□□□□□ -1.78
HPS3Q969F9 Y_RNA.157-201ENST00000363638 102 ntBASIC3.93□□□□□ -1.78
HPS3Q969F9 RNA5SP387-201ENST00000364226 106 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms