Protein–RNA interactions for Protein: P31431

SDC4, Syndecan-4, humanhuman

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P31431 MIR514A1-201ENST00000385133 98 ntBASIC1.33□□□□□ -2.2
SDC4P31431 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
SDC4P31431 BTF3P4-201ENST00000418852 495 ntBASIC1.33□□□□□ -2.2
SDC4P31431 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
SDC4P31431 RPL30P4-201ENST00000429309 333 ntBASIC1.33□□□□□ -2.2
SDC4P31431 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC1.33□□□□□ -2.2
SDC4P31431 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.33□□□□□ -2.2
SDC4P31431 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.33□□□□□ -2.2
SDC4P31431 LARP1BP2-201ENST00000486594 519 ntBASIC1.33□□□□□ -2.2
SDC4P31431 CKS1BP2-201ENST00000497342 240 ntBASIC1.33□□□□□ -2.2
SDC4P31431 AC093801.2-201ENST00000503966 1050 ntBASIC1.33□□□□□ -2.2
SDC4P31431 RNU6-1256P-201ENST00000516539 103 ntBASIC1.33□□□□□ -2.2
SDC4P31431 ARL2BPP5-201ENST00000523141 481 ntBASIC1.33□□□□□ -2.2
SDC4P31431 AC087441.2-201ENST00000529141 262 ntBASIC1.33□□□□□ -2.2
SDC4P31431 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC1.33□□□□□ -2.2
SDC4P31431 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC1.33□□□□□ -2.2
SDC4P31431 AC012435.1-202ENST00000568772 240 ntBASIC1.33□□□□□ -2.2
SDC4P31431 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.33□□□□□ -2.2
SDC4P31431 MIR3660-201ENST00000584845 100 ntBASIC1.33□□□□□ -2.2
SDC4P31431 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC1.33□□□□□ -2.2
SDC4P31431 BNIP3P25-201ENST00000596023 559 ntBASIC1.33□□□□□ -2.2
SDC4P31431 VN1R80P-201ENST00000597126 338 ntBASIC1.33□□□□□ -2.2
SDC4P31431 AP000403.1-201ENST00000603349 851 ntBASIC1.33□□□□□ -2.2
SDC4P31431 BNIP3P4-201ENST00000604946 565 ntBASIC1.33□□□□□ -2.2
SDC4P31431 AC007349.4-201ENST00000608114 532 ntBASIC1.33□□□□□ -2.2
SDC4P31431 AC107905.1-201ENST00000616204 426 ntBASIC1.33□□□□□ -2.2
SDC4P31431 LINC02211-204ENST00000642024 1070 ntBASIC1.33□□□□□ -2.2
SDC4P31431 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SDC4P31431 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC1.32□□□□□ -2.2
SDC4P31431 RNU6-741P-201ENST00000383889 107 ntBASIC1.32□□□□□ -2.2
SDC4P31431 SNORA8-201ENST00000384574 139 ntBASIC1.32□□□□□ -2.2
SDC4P31431 AP1B1P2-201ENST00000416196 106 ntBASIC1.32□□□□□ -2.2
SDC4P31431 THAP5P1-201ENST00000439089 262 ntBASIC1.32□□□□□ -2.2
SDC4P31431 AC107953.1-201ENST00000522216 297 ntBASIC1.32□□□□□ -2.2
SDC4P31431 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC1.32□□□□□ -2.2
SDC4P31431 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.32□□□□□ -2.2
SDC4P31431 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.32□□□□□ -2.2
SDC4P31431 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
SDC4P31431 AC093510.2-201ENST00000562820 896 ntBASIC1.32□□□□□ -2.2
SDC4P31431 MIR4769-201ENST00000584126 77 ntBASIC1.32□□□□□ -2.2
SDC4P31431 AL671309.1-201ENST00000603750 544 ntBASIC1.32□□□□□ -2.2
SDC4P31431 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.32□□□□□ -2.2
SDC4P31431 AL161722.3-201ENST00000605789 2983 ntBASIC1.32□□□□□ -2.2
SDC4P31431 AC010889.1-201ENST00000566193 2666 ntBASIC1.32□□□□□ -2.2
SDC4P31431 AP000560.1-201ENST00000624150 1937 ntBASIC1.31□□□□□ -2.2
SDC4P31431 MIR888-201ENST00000401186 77 ntBASIC1.31□□□□□ -2.2
SDC4P31431 AL033519.2-201ENST00000403958 392 ntBASIC1.31□□□□□ -2.2
SDC4P31431 RNU6-77P-201ENST00000410554 91 ntBASIC1.31□□□□□ -2.2
SDC4P31431 RNU2-47P-201ENST00000410649 186 ntBASIC1.31□□□□□ -2.2
SDC4P31431 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.31□□□□□ -2.2
SDC4P31431 RPS24P7-201ENST00000416921 246 ntBASIC1.31□□□□□ -2.2
SDC4P31431 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.31□□□□□ -2.2
SDC4P31431 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC1.31□□□□□ -2.2
SDC4P31431 SDAD1P3-201ENST00000427380 333 ntBASIC1.31□□□□□ -2.2
SDC4P31431 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.31□□□□□ -2.2
SDC4P31431 MTND2P21-201ENST00000436242 1042 ntBASIC1.31□□□□□ -2.2
SDC4P31431 AL121601.2-201ENST00000438019 707 ntBASIC1.31□□□□□ -2.2
SDC4P31431 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
SDC4P31431 MTCO1P48-201ENST00000448024 1096 ntBASIC1.31□□□□□ -2.2
SDC4P31431 RPL26P9-201ENST00000457466 433 ntBASIC1.31□□□□□ -2.2
SDC4P31431 RPS29P23-201ENST00000458635 123 ntBASIC1.31□□□□□ -2.2
SDC4P31431 TPT1P8-201ENST00000510120 555 ntBASIC1.31□□□□□ -2.2
SDC4P31431 AC093752.1-206ENST00000511823 336 ntBASIC1.31□□□□□ -2.2
SDC4P31431 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.31□□□□□ -2.2
SDC4P31431 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC1.31□□□□□ -2.2
SDC4P31431 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC1.31□□□□□ -2.2
SDC4P31431 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.31□□□□□ -2.2
SDC4P31431 AC084033.1-201ENST00000550830 633 ntBASIC1.31□□□□□ -2.2
SDC4P31431 AC007151.1-201ENST00000572774 483 ntBASIC1.31□□□□□ -2.2
SDC4P31431 AC024619.4-201ENST00000580924 316 ntBASIC1.31□□□□□ -2.2
SDC4P31431 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC1.31□□□□□ -2.2
SDC4P31431 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC1.31□□□□□ -2.2
SDC4P31431 AL391813.1-201ENST00000603098 260 ntBASIC1.31□□□□□ -2.2
SDC4P31431 AP000238.1-201ENST00000608759 426 ntBASIC1.31□□□□□ -2.2
SDC4P31431 uc_338.12-201ENST00000616344 181 ntBASIC1.31□□□□□ -2.2
SDC4P31431 AC008443.7-201ENST00000622195 246 ntBASIC1.31□□□□□ -2.2
SDC4P31431 AL359757.2-201ENST00000624309 274 ntBASIC1.31□□□□□ -2.2
SDC4P31431 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
SDC4P31431 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
SDC4P31431 NDUFS5P1-201ENST00000405668 289 ntBASIC1.3□□□□□ -2.2
SDC4P31431 MTCO3P46-201ENST00000425787 232 ntBASIC1.3□□□□□ -2.2
SDC4P31431 AC007742.1-201ENST00000425789 329 ntBASIC1.3□□□□□ -2.2
SDC4P31431 ZNF863P-201ENST00000426746 417 ntBASIC1.3□□□□□ -2.2
SDC4P31431 RPL31P54-201ENST00000429803 370 ntBASIC1.3□□□□□ -2.2
SDC4P31431 MED14P1-201ENST00000430517 648 ntBASIC1.3□□□□□ -2.2
SDC4P31431 ELOCP26-201ENST00000436067 329 ntBASIC1.3□□□□□ -2.2
SDC4P31431 AC118469.1-201ENST00000442943 488 ntBASIC1.3□□□□□ -2.2
SDC4P31431 RPS29P29-201ENST00000456396 171 ntBASIC1.3□□□□□ -2.2
SDC4P31431 AC005410.1-202ENST00000460347 485 ntBASIC1.3□□□□□ -2.2
SDC4P31431 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.3□□□□□ -2.2
SDC4P31431 SSR3-208ENST00000496050 579 ntTSL 4 BASIC1.3□□□□□ -2.2
SDC4P31431 HMGB1P35-201ENST00000503360 598 ntBASIC1.3□□□□□ -2.2
SDC4P31431 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.3□□□□□ -2.2
SDC4P31431 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.3□□□□□ -2.2
SDC4P31431 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.3□□□□□ -2.2
SDC4P31431 AL031274.2-201ENST00000599419 203 ntBASIC1.3□□□□□ -2.2
SDC4P31431 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.3□□□□□ -2.2
SDC4P31431 AC024581.2-201ENST00000619986 252 ntBASIC1.3□□□□□ -2.2
SDC4P31431 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.3□□□□□ -2.2
SDC4P31431 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms