Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 U3.42-201ENST00000408746 214 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 RNU6-985P-201ENST00000410182 104 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 RPS12P24-201ENST00000412619 387 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 BX842559.1-201ENST00000419615 532 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 RPL31P12-201ENST00000422587 358 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 CBX3P6-201ENST00000430257 527 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 HMGB1P27-201ENST00000431429 603 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 HMGN2P7-201ENST00000456186 273 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 RPL35AP15-201ENST00000468042 339 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 AC083904.1-201ENST00000487828 231 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 RN7SL283P-201ENST00000489055 303 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 CCDC34P1-201ENST00000507441 517 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 RNA5SP446-201ENST00000515955 82 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 RN7SKP21-201ENST00000516503 220 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 RNU6-988P-201ENST00000519081 107 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 AP003730.1-201ENST00000524605 285 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 TRAV8-5-201ENST00000537369 341 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 AC104763.2-201ENST00000604179 382 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 AL391261.4-201ENST00000616012 481 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 AC007546.1-201ENST00000619452 559 ntBASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
CLIP3Q96DZ5 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 RNU6-817P-201ENST00000391083 104 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AC074085.1-201ENST00000413598 418 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AC114491.1-201ENST00000416095 246 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AL139095.3-201ENST00000419672 1203 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AC091390.3-201ENST00000426478 338 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 USP9YP16-201ENST00000430287 407 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AC009237.8-201ENST00000445492 379 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 USP9YP23-201ENST00000455085 407 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AC087588.1-201ENST00000462203 316 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 RN7SL41P-201ENST00000476144 297 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AC098591.2-201ENST00000510152 315 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 RN7SKP60-201ENST00000516985 239 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 ATP5F1P5-201ENST00000526403 760 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AP000889.2-201ENST00000532684 490 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 ZYXP1-201ENST00000617638 118 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 AP001486.2-201ENST00000561652 5113 ntBASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.12□□□□□ -1.75
CLIP3Q96DZ5 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 Y_RNA.5-201ENST00000362334 102 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 Y_RNA.378-201ENST00000365652 113 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 RNU6-1013P-201ENST00000384180 107 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 SNORA24.1-201ENST00000384401 135 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 RNU6-14P-201ENST00000384630 106 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 RNU6-1197P-201ENST00000391183 107 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 CISD1P1-201ENST00000393907 327 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 AL606923.1-201ENST00000406616 190 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 RNA5SP36-201ENST00000410197 133 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 Z85995.1-201ENST00000415547 335 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 UBE2D3P2-201ENST00000424409 445 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 NDUFB4P6-201ENST00000436819 366 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 RPL21P23-201ENST00000446654 460 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 AC107399.1-201ENST00000451226 265 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 MTCO3P10-201ENST00000455912 772 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 RNU6-953P-201ENST00000459154 107 ntBASIC4.11□□□□□ -1.75
CLIP3Q96DZ5 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 144.8 ms