Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 HSBP1P1-201ENST00000555205 166 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 MIR1273G-201ENST00000577677 100 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
USF3Q68DE3 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC0.79□□□□□ -2.28
USF3Q68DE3 MIR625-201ENST00000385047 85 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 RNU6-516P-201ENST00000411381 104 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 MTCO3P12-201ENST00000416718 547 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC0.79□□□□□ -2.28
USF3Q68DE3 SEPT2P1-201ENST00000419651 180 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 AL022238.1-201ENST00000442557 355 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 BX248409.1-201ENST00000455497 255 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 RNU6-1132P-201ENST00000459214 107 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 RPS23P4-201ENST00000487908 423 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 AC111193.1-201ENST00000504097 155 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC0.79□□□□□ -2.28
USF3Q68DE3 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
USF3Q68DE3 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC0.79□□□□□ -2.28
USF3Q68DE3 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC0.79□□□□□ -2.28
USF3Q68DE3 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC0.79□□□□□ -2.28
USF3Q68DE3 MTCYBP23-201ENST00000558717 1102 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 SULT1C2P1-202ENST00000562418 459 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 AC012254.4-201ENST00000588843 273 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC0.79□□□□□ -2.28
USF3Q68DE3 AC211469.2-201ENST00000605461 205 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 AC106052.1-201ENST00000608029 497 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 AC004908.2-201ENST00000609090 574 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC0.78□□□□□ -2.28
USF3Q68DE3 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
USF3Q68DE3 RNU6-98P-201ENST00000384173 107 ntBASIC0.78□□□□□ -2.28
USF3Q68DE3 RNU6-185P-201ENST00000384421 107 ntBASIC0.78□□□□□ -2.28
USF3Q68DE3 RNU6-821P-201ENST00000390995 107 ntBASIC0.78□□□□□ -2.28
USF3Q68DE3 RNU1-78P-201ENST00000391248 165 ntBASIC0.78□□□□□ -2.28
USF3Q68DE3 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC0.78□□□□□ -2.28
USF3Q68DE3 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
USF3Q68DE3 CBX3P6-201ENST00000430257 527 ntBASIC0.78□□□□□ -2.28
USF3Q68DE3 USP12PX-201ENST00000432383 1057 ntBASIC0.78□□□□□ -2.28
USF3Q68DE3 NEFMP1-201ENST00000443423 1006 ntBASIC0.78□□□□□ -2.28
USF3Q68DE3 RPS15AP27-201ENST00000449183 343 ntBASIC0.78□□□□□ -2.28
USF3Q68DE3 COL6A4P2-205ENST00000509855 506 ntBASIC0.78□□□□□ -2.28
USF3Q68DE3 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
USF3Q68DE3 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
USF3Q68DE3 IMMP1LP2-201ENST00000552954 492 ntBASIC0.78□□□□□ -2.28
USF3Q68DE3 MIR4529-201ENST00000578110 78 ntBASIC0.78□□□□□ -2.28
USF3Q68DE3 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC0.78□□□□□ -2.28
USF3Q68DE3 AL360085.1-201ENST00000604713 532 ntBASIC0.78□□□□□ -2.28
USF3Q68DE3 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC0.78□□□□□ -2.28
USF3Q68DE3 AC010487.4-201ENST00000637027 61 ntBASIC0.78□□□□□ -2.28
USF3Q68DE3 RNA5SP457-201ENST00000363657 124 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 RPS3AP24-201ENST00000407896 734 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 CYCSP48-201ENST00000417124 323 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.77□□□□□ -2.29
USF3Q68DE3 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC0.77□□□□□ -2.29
USF3Q68DE3 MTATP6P7-201ENST00000453315 681 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC0.77□□□□□ -2.29
USF3Q68DE3 AC055731.1-201ENST00000474387 401 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC0.77□□□□□ -2.29
USF3Q68DE3 AC008494.2-201ENST00000514544 370 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC0.77□□□□□ -2.29
USF3Q68DE3 AP001330.4-201ENST00000604350 154 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
USF3Q68DE3 AC008133.2-201ENST00000624540 351 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 MIR7515-201ENST00000637837 67 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 ZNF736P3Y-201ENST00000428264 1465 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
USF3Q68DE3 MTND4P31-201ENST00000425607 1343 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC0.77□□□□□ -2.29
USF3Q68DE3 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
USF3Q68DE3 RNA5SP257-201ENST00000363023 116 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 AGR3-202ENST00000402239 563 ntTSL 2 BASIC0.77□□□□□ -2.29
USF3Q68DE3 RNU6-712P-201ENST00000410558 100 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC0.77□□□□□ -2.29
USF3Q68DE3 BUD31P2-201ENST00000449374 300 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC0.77□□□□□ -2.29
USF3Q68DE3 AC015908.1-201ENST00000478739 476 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 OR52A4P-202ENST00000481634 799 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC0.77□□□□□ -2.29
USF3Q68DE3 RPS27P26-201ENST00000494583 239 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 AC008562.1-201ENST00000521763 330 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC0.77□□□□□ -2.29
USF3Q68DE3 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC0.77□□□□□ -2.29
USF3Q68DE3 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC0.77□□□□□ -2.29
USF3Q68DE3 AC084033.1-201ENST00000550830 633 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 MIR3198-2-201ENST00000577868 80 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 MIR5571-201ENST00000577998 113 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 AC105245.1-201ENST00000581934 244 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC0.77□□□□□ -2.29
USF3Q68DE3 AC106900.2-201ENST00000604994 317 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
USF3Q68DE3 AP006248.3-201ENST00000623580 594 ntBASIC0.77□□□□□ -2.29
USF3Q68DE3 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC0.77□□□□□ -2.29
USF3Q68DE3 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
USF3Q68DE3 RNU6-716P-201ENST00000365621 103 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 MIR147B-201ENST00000390185 80 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 AP002784.2-201ENST00000397300 549 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC0.76□□□□□ -2.29
USF3Q68DE3 OFD1P18Y-201ENST00000420889 959 ntBASIC0.76□□□□□ -2.29
USF3Q68DE3 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC0.76□□□□□ -2.29
USF3Q68DE3 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms