Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MTND5P7-201ENST00000413558 1798 ntBASIC4.34□□□□□ -1.71
RNF4P78317 AC139713.2-214ENST00000642059 1811 ntBASIC4.34□□□□□ -1.71
RNF4P78317 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
RNF4P78317 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
RNF4P78317 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.72
RNF4P78317 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.72
RNF4P78317 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
RNF4P78317 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
RNF4P78317 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
RNF4P78317 MTND5P27-201ENST00000428871 1720 ntBASIC4.33□□□□□ -1.72
RNF4P78317 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
RNF4P78317 Y_RNA.245-201ENST00000364493 95 ntBASIC4.33□□□□□ -1.72
RNF4P78317 Y_RNA.288-201ENST00000364854 92 ntBASIC4.33□□□□□ -1.72
RNF4P78317 Y_RNA.447-201ENST00000384184 113 ntBASIC4.33□□□□□ -1.72
RNF4P78317 SNORA51.11-201ENST00000384442 131 ntBASIC4.33□□□□□ -1.72
RNF4P78317 MIR625-201ENST00000385047 85 ntBASIC4.33□□□□□ -1.72
RNF4P78317 U3.42-201ENST00000408746 214 ntBASIC4.33□□□□□ -1.72
RNF4P78317 SNORD56-201ENST00000413522 71 ntBASIC4.33□□□□□ -1.72
RNF4P78317 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.33□□□□□ -1.72
RNF4P78317 RPL27AP8-201ENST00000424277 446 ntBASIC4.33□□□□□ -1.72
RNF4P78317 AC087650.1-201ENST00000431445 468 ntBASIC4.33□□□□□ -1.72
RNF4P78317 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.33□□□□□ -1.72
RNF4P78317 SNORD108-201ENST00000459332 71 ntBASIC4.33□□□□□ -1.72
RNF4P78317 AC133134.1-201ENST00000466800 359 ntBASIC4.33□□□□□ -1.72
RNF4P78317 RN7SL354P-201ENST00000469282 294 ntBASIC4.33□□□□□ -1.72
RNF4P78317 RPS20P22-201ENST00000473700 357 ntBASIC4.33□□□□□ -1.72
RNF4P78317 AC020890.1-201ENST00000491837 504 ntBASIC4.33□□□□□ -1.72
RNF4P78317 RPL36AP41-201ENST00000493820 306 ntBASIC4.33□□□□□ -1.72
RNF4P78317 RN7SKP46-201ENST00000515942 234 ntBASIC4.33□□□□□ -1.72
RNF4P78317 RNU6-1143P-201ENST00000516125 104 ntBASIC4.33□□□□□ -1.72
RNF4P78317 RNU6-397P-201ENST00000516226 104 ntBASIC4.33□□□□□ -1.72
RNF4P78317 RNA5SP290-201ENST00000517133 127 ntBASIC4.33□□□□□ -1.72
RNF4P78317 AP005902.1-201ENST00000521358 186 ntBASIC4.33□□□□□ -1.72
RNF4P78317 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC4.33□□□□□ -1.72
RNF4P78317 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.33□□□□□ -1.72
RNF4P78317 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.33□□□□□ -1.72
RNF4P78317 AC004024.1-201ENST00000549244 247 ntBASIC4.33□□□□□ -1.72
RNF4P78317 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.33□□□□□ -1.72
RNF4P78317 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.33□□□□□ -1.72
RNF4P78317 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
RNF4P78317 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC4.33□□□□□ -1.72
RNF4P78317 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.33□□□□□ -1.72
RNF4P78317 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
RNF4P78317 AC125232.2-201ENST00000592457 143 ntBASIC4.33□□□□□ -1.72
RNF4P78317 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.33□□□□□ -1.72
RNF4P78317 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.33□□□□□ -1.72
RNF4P78317 RN7SL722P-201ENST00000617780 284 ntBASIC4.33□□□□□ -1.72
RNF4P78317 RN7SL565P-201ENST00000618246 284 ntBASIC4.33□□□□□ -1.72
RNF4P78317 MIR7703-201ENST00000620784 77 ntBASIC4.33□□□□□ -1.72
RNF4P78317 AC078938.1-201ENST00000620993 318 ntBASIC4.33□□□□□ -1.72
RNF4P78317 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
RNF4P78317 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.33□□□□□ -1.72
RNF4P78317 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
RNF4P78317 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.33□□□□□ -1.72
RNF4P78317 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
RNF4P78317 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.33□□□□□ -1.72
RNF4P78317 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
RNF4P78317 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
RNF4P78317 ZNF137P-201ENST00000456718 1920 ntBASIC4.33□□□□□ -1.72
RNF4P78317 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.32□□□□□ -1.72
RNF4P78317 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
RNF4P78317 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
RNF4P78317 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.32□□□□□ -1.72
RNF4P78317 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.32□□□□□ -1.72
RNF4P78317 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
RNF4P78317 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
RNF4P78317 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
RNF4P78317 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.32□□□□□ -1.72
RNF4P78317 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
RNF4P78317 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
RNF4P78317 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
RNF4P78317 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.32□□□□□ -1.72
RNF4P78317 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
RNF4P78317 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
RNF4P78317 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
RNF4P78317 AC007685.1-201ENST00000329806 452 ntBASIC4.32□□□□□ -1.72
RNF4P78317 Y_RNA.26-201ENST00000362539 101 ntBASIC4.32□□□□□ -1.72
RNF4P78317 SNORA71.2-201ENST00000364941 134 ntBASIC4.32□□□□□ -1.72
RNF4P78317 U3.15-201ENST00000365398 212 ntBASIC4.32□□□□□ -1.72
RNF4P78317 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.32□□□□□ -1.72
RNF4P78317 SNORA70F-201ENST00000384142 135 ntBASIC4.32□□□□□ -1.72
RNF4P78317 RNU6-398P-201ENST00000384143 109 ntBASIC4.32□□□□□ -1.72
RNF4P78317 MIR10A-201ENST00000385043 110 ntBASIC4.32□□□□□ -1.72
RNF4P78317 AL591034.2-201ENST00000402839 359 ntBASIC4.32□□□□□ -1.72
RNF4P78317 CYP4F29P-201ENST00000420685 446 ntBASIC4.32□□□□□ -1.72
RNF4P78317 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.32□□□□□ -1.72
RNF4P78317 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.32□□□□□ -1.72
RNF4P78317 RPS29P33-201ENST00000456717 146 ntBASIC4.32□□□□□ -1.72
RNF4P78317 SCARNA10-201ENST00000459255 330 ntBASIC4.32□□□□□ -1.72
RNF4P78317 RPL23AP45-201ENST00000476406 468 ntBASIC4.32□□□□□ -1.72
RNF4P78317 AF213884.1-201ENST00000488102 463 ntBASIC4.32□□□□□ -1.72
RNF4P78317 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.32□□□□□ -1.72
RNF4P78317 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC4.32□□□□□ -1.72
RNF4P78317 AC025755.1-201ENST00000521306 278 ntBASIC4.32□□□□□ -1.72
RNF4P78317 AC103996.1-201ENST00000555468 102 ntBASIC4.32□□□□□ -1.72
RNF4P78317 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.32□□□□□ -1.72
RNF4P78317 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.32□□□□□ -1.72
RNF4P78317 U3.53-201ENST00000628922 216 ntBASIC4.32□□□□□ -1.72
RNF4P78317 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
RNF4P78317 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms