Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 HMGN1P12-201ENST00000499125 195 ntBASIC4.05□□□□□ -1.76
SMARCA1P28370 AC114786.4-201ENST00000508771 728 ntBASIC4.05□□□□□ -1.76
SMARCA1P28370 AC008549.1-201ENST00000512900 643 ntBASIC4.05□□□□□ -1.76
SMARCA1P28370 AC114781.4-201ENST00000513707 639 ntBASIC4.05□□□□□ -1.76
SMARCA1P28370 PSMA2P1-201ENST00000526365 646 ntBASIC4.05□□□□□ -1.76
SMARCA1P28370 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.05□□□□□ -1.76
SMARCA1P28370 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SMARCA1P28370 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SMARCA1P28370 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.05□□□□□ -1.76
SMARCA1P28370 MIR4703-201ENST00000577728 79 ntBASIC4.05□□□□□ -1.76
SMARCA1P28370 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.05□□□□□ -1.76
SMARCA1P28370 AC025253.1-201ENST00000613623 543 ntBASIC4.05□□□□□ -1.76
SMARCA1P28370 AC104260.1-201ENST00000616660 539 ntBASIC4.05□□□□□ -1.76
SMARCA1P28370 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.05□□□□□ -1.76
SMARCA1P28370 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SMARCA1P28370 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SMARCA1P28370 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SMARCA1P28370 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.05□□□□□ -1.76
SMARCA1P28370 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SMARCA1P28370 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SMARCA1P28370 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
SMARCA1P28370 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.04□□□□□ -1.76
SMARCA1P28370 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SMARCA1P28370 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
SMARCA1P28370 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SMARCA1P28370 RNA5SP295-201ENST00000362655 121 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 RNU6-552P-201ENST00000362869 119 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 Y_RNA.279-201ENST00000364763 95 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 RNU4-20P-201ENST00000365601 151 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 RNU6-14P-201ENST00000384630 106 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
SMARCA1P28370 RNA5SP118-201ENST00000410385 109 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC4.04□□□□□ -1.76
SMARCA1P28370 AC068533.1-201ENST00000418542 415 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.04□□□□□ -1.76
SMARCA1P28370 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4.04□□□□□ -1.76
SMARCA1P28370 AC008850.1-201ENST00000427546 362 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.04□□□□□ -1.76
SMARCA1P28370 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.04□□□□□ -1.76
SMARCA1P28370 PMCHL2-203ENST00000457791 237 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 RN7SL293P-201ENST00000481765 281 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.04□□□□□ -1.76
SMARCA1P28370 AC108860.1-201ENST00000484521 383 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 HMGB3P15-201ENST00000507326 574 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 AC026784.1-201ENST00000507986 352 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SMARCA1P28370 RBBP4P6-201ENST00000508098 202 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 RNU1-61P-201ENST00000516107 151 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 RNA5SP503-201ENST00000517047 117 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.04□□□□□ -1.76
SMARCA1P28370 ADI1P3-201ENST00000549509 470 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 SYF2P1-201ENST00000550658 413 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.04□□□□□ -1.76
SMARCA1P28370 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC4.04□□□□□ -1.76
SMARCA1P28370 MIR4738-201ENST00000579134 87 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 DPPA3P3-201ENST00000603842 430 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 AC007619.2-201ENST00000605743 379 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.04□□□□□ -1.76
SMARCA1P28370 MIR8058-201ENST00000615737 89 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 U4.6-201ENST00000621618 127 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.04□□□□□ -1.76
SMARCA1P28370 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.04□□□□□ -1.76
SMARCA1P28370 PRO1804-201ENST00000623780 2050 ntBASIC4.04□□□□□ -1.76
SMARCA1P28370 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.04□□□□□ -1.76
SMARCA1P28370 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SMARCA1P28370 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SMARCA1P28370 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.03□□□□□ -1.76
SMARCA1P28370 OR4G1P-203ENST00000641984 1631 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
SMARCA1P28370 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SMARCA1P28370 SNORD17-201ENST00000390930 237 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 RNU6-332P-201ENST00000391193 108 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 RNU2-29P-201ENST00000410423 189 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC4.03□□□□□ -1.76
SMARCA1P28370 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.03□□□□□ -1.76
SMARCA1P28370 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.03□□□□□ -1.76
SMARCA1P28370 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.03□□□□□ -1.76
SMARCA1P28370 SRIP2-201ENST00000428470 166 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 AC098614.3-201ENST00000438957 440 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.03□□□□□ -1.76
SMARCA1P28370 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.03□□□□□ -1.76
SMARCA1P28370 AC020550.1-201ENST00000447385 163 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.03□□□□□ -1.76
SMARCA1P28370 AC034236.1-201ENST00000469891 373 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 HSPE1P6-201ENST00000479457 291 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 RPL38P4-201ENST00000502376 214 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 GMPSP1-201ENST00000514075 579 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 RNU6-875P-201ENST00000516488 106 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 RNU6-840P-201ENST00000517275 65 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC4.03□□□□□ -1.76
SMARCA1P28370 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.03□□□□□ -1.76
SMARCA1P28370 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SMARCA1P28370 AC008521.1-201ENST00000587471 187 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 UBE2V2P2-201ENST00000587677 504 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 AC067852.3-201ENST00000589177 561 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC4.03□□□□□ -1.76
SMARCA1P28370 AC022149.2-201ENST00000621061 203 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 U6.114-201ENST00000636407 96 ntBASIC4.03□□□□□ -1.76
SMARCA1P28370 API5P2-201ENST00000397055 1498 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 213.8 ms