Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 U4.7-201ENST00000638126 106 ntBASIC4.61□□□□□ -1.67
COL8A1P27658 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL8A1P27658 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC4.61□□□□□ -1.67
COL8A1P27658 AC104964.3-201ENST00000606115 2860 ntBASIC4.61□□□□□ -1.67
COL8A1P27658 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.61□□□□□ -1.67
COL8A1P27658 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC4.61□□□□□ -1.67
COL8A1P27658 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL8A1P27658 AL079305.1-201ENST00000623159 3008 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL8A1P27658 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC4.6□□□□□ -1.67
COL8A1P27658 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL8A1P27658 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL8A1P27658 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.6□□□□□ -1.67
COL8A1P27658 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL8A1P27658 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL8A1P27658 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL8A1P27658 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL8A1P27658 RNA5SP52-201ENST00000362448 134 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 RNU6-1272P-201ENST00000362776 107 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 RNA5SP515-201ENST00000364570 118 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 RNU6-384P-201ENST00000364900 104 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 RNU6-395P-201ENST00000365662 106 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 RNU6-213P-201ENST00000384051 104 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.6□□□□□ -1.67
COL8A1P27658 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.6□□□□□ -1.67
COL8A1P27658 AC005154.2-201ENST00000438110 379 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC4.6□□□□□ -1.67
COL8A1P27658 Z82210.1-201ENST00000440037 231 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 MTCO1P44-201ENST00000441935 243 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 RPL34P20-201ENST00000442771 351 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 RPL10P17-201ENST00000453852 316 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC4.6□□□□□ -1.67
COL8A1P27658 NDUFA5P6-201ENST00000542110 379 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 AC005476.1-201ENST00000554427 397 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 AL157871.3-201ENST00000557231 293 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.6□□□□□ -1.67
COL8A1P27658 AC091042.1-201ENST00000579213 173 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 AC060780.2-201ENST00000589047 198 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.6□□□□□ -1.67
COL8A1P27658 AL161629.2-201ENST00000615347 275 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 AP001340.1-201ENST00000624405 217 ntBASIC4.6□□□□□ -1.67
COL8A1P27658 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
COL8A1P27658 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL8A1P27658 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL8A1P27658 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL8A1P27658 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL8A1P27658 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL8A1P27658 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC4.6□□□□□ -1.67
COL8A1P27658 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL8A1P27658 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL8A1P27658 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
COL8A1P27658 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL8A1P27658 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL8A1P27658 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL8A1P27658 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL8A1P27658 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL8A1P27658 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL8A1P27658 RNA5SP326-201ENST00000363209 110 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 RNU6-961P-201ENST00000363893 105 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 SNORD115-32-201ENST00000364079 82 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 Y_RNA.337-201ENST00000365312 102 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL8A1P27658 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL8A1P27658 Y_RNA.525-201ENST00000384570 113 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 BTF3P11-201ENST00000426582 477 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 AL451062.2-201ENST00000427515 271 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 RPL12P18-201ENST00000437175 325 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC4.59□□□□□ -1.67
COL8A1P27658 RPL21P126-201ENST00000470049 478 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 RPL21P13-201ENST00000488305 481 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 AC114774.1-201ENST00000507410 1770 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 COX6B1P5-201ENST00000509843 249 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 TOMM22P4-201ENST00000511318 336 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 RN7SKP122-201ENST00000515923 296 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC4.59□□□□□ -1.67
COL8A1P27658 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL8A1P27658 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.59□□□□□ -1.67
COL8A1P27658 MIR4675-201ENST00000577898 77 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.59□□□□□ -1.67
COL8A1P27658 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC4.59□□□□□ -1.67
COL8A1P27658 AL355812.1-201ENST00000603215 216 ntBASIC4.59□□□□□ -1.67
COL8A1P27658 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.59□□□□□ -1.67
COL8A1P27658 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL8A1P27658 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
COL8A1P27658 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
COL8A1P27658 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
COL8A1P27658 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC4.59□□□□□ -1.68
COL8A1P27658 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
COL8A1P27658 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL8A1P27658 SDAD1P1-202ENST00000524156 2051 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 LINC01109-201ENST00000603837 3081 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL8A1P27658 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.58□□□□□ -1.68
COL8A1P27658 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL8A1P27658 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
COL8A1P27658 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
COL8A1P27658 MIR133A2-201ENST00000347538 102 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 Y_RNA.116-201ENST00000363292 103 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 SNORD73B-201ENST00000364394 72 ntBASIC4.58□□□□□ -1.68
COL8A1P27658 MIR301A-201ENST00000385261 86 ntBASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 171 ms