Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 PRDX3P3-201ENST00000447765 522 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AC079448.1-201ENST00000449377 373 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 CYCSP35-201ENST00000451978 304 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 SNORA84-201ENST00000459229 133 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 FTH1P2-201ENST00000466086 412 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AC007182.2-201ENST00000489251 402 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 MTCO3P7-201ENST00000510008 774 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 SCARNA24.1-201ENST00000516465 137 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 SNORD59.2-201ENST00000516873 68 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AC068790.2-201ENST00000602601 557 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AC104763.2-201ENST00000604179 382 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AC107294.1-201ENST00000609524 467 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AL365204.3-201ENST00000612448 685 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AC073308.1-201ENST00000623696 305 ntBASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
LIMA1Q9UHB6 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 Y_RNA.22-201ENST00000362492 102 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 Y_RNA.194-201ENST00000363985 102 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 RNU6-140P-201ENST00000384566 108 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 Y_RNA.559-201ENST00000384686 107 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 MIR181B1-201ENST00000385240 110 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 AC133104.1-201ENST00000429100 218 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 AC034236.1-201ENST00000469891 373 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 DUXAP2-201ENST00000519198 589 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 AC090572.1-201ENST00000519251 160 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 MIR3158-1-201ENST00000583596 81 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 AC087683.1-201ENST00000591187 441 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 AC012119.1-201ENST00000603184 222 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 AC073648.5-201ENST00000603502 305 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 AC006133.1-201ENST00000617106 264 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 AC098679.4-201ENST00000624241 654 ntBASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.3□□□□□ -1.88
LIMA1Q9UHB6 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 FTLP6-201ENST00000355274 422 ntBASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 RNU6-512P-201ENST00000364438 103 ntBASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 SNORA14A-201ENST00000364773 135 ntBASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 RNU6-641P-201ENST00000384006 107 ntBASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 AC069157.1-201ENST00000421749 137 ntBASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 AL358934.1-201ENST00000432346 324 ntBASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 MTCYBP1-201ENST00000454315 1119 ntBASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 AL031183.1-201ENST00000457667 207 ntBASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 RNU6-953P-201ENST00000459154 107 ntBASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 AC105252.1-201ENST00000503089 286 ntBASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 AL391840.1-201ENST00000571144 367 ntBASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 AC103591.3-201ENST00000608684 209 ntBASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 AC122108.2-201ENST00000611946 526 ntBASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 MTND5P42-201ENST00000637720 498 ntBASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.29□□□□□ -1.88
LIMA1Q9UHB6 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.28□□□□□ -1.88
LIMA1Q9UHB6 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
LIMA1Q9UHB6 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
LIMA1Q9UHB6 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
LIMA1Q9UHB6 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
LIMA1Q9UHB6 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
LIMA1Q9UHB6 RNU6-623P-201ENST00000363143 105 ntBASIC3.28□□□□□ -1.88
LIMA1Q9UHB6 RNU6-288P-201ENST00000363690 104 ntBASIC3.28□□□□□ -1.88
LIMA1Q9UHB6 OR5H15-201ENST00000383696 930 ntBASIC3.28□□□□□ -1.88
LIMA1Q9UHB6 RNU6-190P-201ENST00000384154 102 ntBASIC3.28□□□□□ -1.88
LIMA1Q9UHB6 MIR183-201ENST00000384958 110 ntBASIC3.28□□□□□ -1.88
LIMA1Q9UHB6 RNU1-101P-201ENST00000391171 127 ntBASIC3.28□□□□□ -1.88
LIMA1Q9UHB6 RNU2-39P-201ENST00000410604 198 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms