Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.02□□□□□ -1.93
LHX1P48742 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.02□□□□□ -1.93
LHX1P48742 NBR2-204ENST00000587322 63 ntBASIC3.02□□□□□ -1.93
LHX1P48742 AC119751.7-201ENST00000600494 245 ntBASIC3.02□□□□□ -1.93
LHX1P48742 AL670379.6-201ENST00000603753 252 ntBASIC3.02□□□□□ -1.93
LHX1P48742 AL670379.11-201ENST00000604059 253 ntBASIC3.02□□□□□ -1.93
LHX1P48742 AC008162.1-201ENST00000604718 254 ntBASIC3.02□□□□□ -1.93
LHX1P48742 AL670379.1-201ENST00000604752 252 ntBASIC3.02□□□□□ -1.93
LHX1P48742 AL670379.5-201ENST00000605253 252 ntBASIC3.02□□□□□ -1.93
LHX1P48742 AL670379.12-201ENST00000605291 253 ntBASIC3.02□□□□□ -1.93
LHX1P48742 AL670379.8-201ENST00000605353 252 ntBASIC3.02□□□□□ -1.93
LHX1P48742 AL670379.7-201ENST00000605823 252 ntBASIC3.02□□□□□ -1.93
LHX1P48742 AC087752.4-201ENST00000605911 462 ntBASIC3.02□□□□□ -1.93
LHX1P48742 AC090115.4-201ENST00000609970 188 ntBASIC3.02□□□□□ -1.93
LHX1P48742 AC010338.1-201ENST00000621823 717 ntBASIC3.02□□□□□ -1.93
LHX1P48742 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.02□□□□□ -1.93
LHX1P48742 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.02□□□□□ -1.93
LHX1P48742 AC110994.2-201ENST00000635481 492 ntBASIC3.02□□□□□ -1.93
LHX1P48742 MTND1P37-201ENST00000636562 264 ntBASIC3.02□□□□□ -1.93
LHX1P48742 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.01□□□□□ -1.93
LHX1P48742 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
LHX1P48742 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
LHX1P48742 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LHX1P48742 Y_RNA.201-201ENST00000364052 96 ntBASIC3.01□□□□□ -1.93
LHX1P48742 RNU6-701P-201ENST00000384059 107 ntBASIC3.01□□□□□ -1.93
LHX1P48742 Y_RNA.553-201ENST00000384670 102 ntBASIC3.01□□□□□ -1.93
LHX1P48742 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC3.01□□□□□ -1.93
LHX1P48742 BTF3L4P3-201ENST00000418879 476 ntBASIC3.01□□□□□ -1.93
LHX1P48742 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.01□□□□□ -1.93
LHX1P48742 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.01□□□□□ -1.93
LHX1P48742 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.01□□□□□ -1.93
LHX1P48742 BNIP3P2-201ENST00000441221 577 ntBASIC3.01□□□□□ -1.93
LHX1P48742 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.01□□□□□ -1.93
LHX1P48742 KATNBL1P3-201ENST00000443475 909 ntBASIC3.01□□□□□ -1.93
LHX1P48742 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.01□□□□□ -1.93
LHX1P48742 USP9YP29-201ENST00000445112 563 ntBASIC3.01□□□□□ -1.93
LHX1P48742 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.01□□□□□ -1.93
LHX1P48742 AC013267.1-201ENST00000458227 267 ntBASIC3.01□□□□□ -1.93
LHX1P48742 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.01□□□□□ -1.93
LHX1P48742 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.01□□□□□ -1.93
LHX1P48742 RN7SL432P-201ENST00000484057 298 ntBASIC3.01□□□□□ -1.93
LHX1P48742 AL160314.1-201ENST00000490836 438 ntBASIC3.01□□□□□ -1.93
LHX1P48742 AC010424.1-201ENST00000506336 297 ntBASIC3.01□□□□□ -1.93
LHX1P48742 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.01□□□□□ -1.93
LHX1P48742 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.01□□□□□ -1.93
LHX1P48742 RNU1-103P-201ENST00000516502 125 ntBASIC3.01□□□□□ -1.93
LHX1P48742 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.01□□□□□ -1.93
LHX1P48742 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
LHX1P48742 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.01□□□□□ -1.93
LHX1P48742 HPRT1P3-201ENST00000539521 576 ntBASIC3.01□□□□□ -1.93
LHX1P48742 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.01□□□□□ -1.93
LHX1P48742 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.01□□□□□ -1.93
LHX1P48742 HMGB1P14-201ENST00000557424 591 ntBASIC3.01□□□□□ -1.93
LHX1P48742 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.01□□□□□ -1.93
LHX1P48742 CYCSP39-201ENST00000565821 309 ntBASIC3.01□□□□□ -1.93
LHX1P48742 HMGB1P6-201ENST00000569046 646 ntBASIC3.01□□□□□ -1.93
LHX1P48742 AP005136.1-201ENST00000579765 429 ntBASIC3.01□□□□□ -1.93
LHX1P48742 AC138761.3-201ENST00000579993 334 ntBASIC3.01□□□□□ -1.93
LHX1P48742 AC040904.1-201ENST00000590850 223 ntBASIC3.01□□□□□ -1.93
LHX1P48742 AC079089.3-201ENST00000603094 673 ntBASIC3.01□□□□□ -1.93
LHX1P48742 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.01□□□□□ -1.93
LHX1P48742 AL451064.1-201ENST00000607718 471 ntBASIC3.01□□□□□ -1.93
LHX1P48742 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.01□□□□□ -1.93
LHX1P48742 PISRT1-201ENST00000626175 531 ntBASIC3.01□□□□□ -1.93
LHX1P48742 SCARNA15.3-201ENST00000626315 122 ntBASIC3.01□□□□□ -1.93
LHX1P48742 SCARNA4.1-201ENST00000628597 123 ntBASIC3.01□□□□□ -1.93
LHX1P48742 AL365361.1-201ENST00000566942 3481 ntBASIC3.01□□□□□ -1.93
LHX1P48742 AC093831.2-201ENST00000624393 3427 ntBASIC3□□□□□ -1.93
LHX1P48742 FARSBP1-201ENST00000435808 1778 ntBASIC3□□□□□ -1.93
LHX1P48742 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3□□□□□ -1.93
LHX1P48742 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3□□□□□ -1.93
LHX1P48742 AC127391.1-201ENST00000411737 98 ntBASIC3□□□□□ -1.93
LHX1P48742 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3□□□□□ -1.93
LHX1P48742 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3□□□□□ -1.93
LHX1P48742 AL139281.1-201ENST00000422120 335 ntBASIC3□□□□□ -1.93
LHX1P48742 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3□□□□□ -1.93
LHX1P48742 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3□□□□□ -1.93
LHX1P48742 HMGB1P27-201ENST00000431429 603 ntBASIC3□□□□□ -1.93
LHX1P48742 GAPDHP17-201ENST00000449858 1001 ntBASIC3□□□□□ -1.93
LHX1P48742 SNRPGP6-201ENST00000451124 220 ntBASIC3□□□□□ -1.93
LHX1P48742 RPL37P6-201ENST00000460682 294 ntBASIC3□□□□□ -1.93
LHX1P48742 RAP1BP2-201ENST00000478270 544 ntBASIC3□□□□□ -1.93
LHX1P48742 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3□□□□□ -1.93
LHX1P48742 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC3□□□□□ -1.93
LHX1P48742 SNORD59.2-201ENST00000516873 68 ntBASIC3□□□□□ -1.93
LHX1P48742 RNU6-928P-201ENST00000516876 104 ntBASIC3□□□□□ -1.93
LHX1P48742 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3□□□□□ -1.93
LHX1P48742 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3□□□□□ -1.93
LHX1P48742 GTF3AP2-201ENST00000557014 266 ntBASIC3□□□□□ -1.93
LHX1P48742 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3□□□□□ -1.93
LHX1P48742 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3□□□□□ -1.93
LHX1P48742 RN7SKP299-201ENST00000606679 301 ntBASIC3□□□□□ -1.93
LHX1P48742 AL133173.2-201ENST00000614270 90 ntBASIC3□□□□□ -1.93
LHX1P48742 AC090582.1-201ENST00000636321 199 ntBASIC3□□□□□ -1.93
LHX1P48742 AL390237.1-201ENST00000404226 1415 ntBASIC3□□□□□ -1.93
LHX1P48742 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3□□□□□ -1.93
LHX1P48742 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3□□□□□ -1.93
LHX1P48742 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3□□□□□ -1.93
LHX1P48742 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
LHX1P48742 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms