Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RN7SL97P-201ENST00000486780 299 ntBASIC4.89□□□□□ -1.63
MSX1P28360 RPL30P1-201ENST00000488676 339 ntBASIC4.89□□□□□ -1.63
MSX1P28360 AC140059.1-201ENST00000489238 361 ntBASIC4.89□□□□□ -1.63
MSX1P28360 RPL23AP75-201ENST00000491601 451 ntBASIC4.89□□□□□ -1.63
MSX1P28360 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC4.89□□□□□ -1.63
MSX1P28360 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.89□□□□□ -1.63
MSX1P28360 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.89□□□□□ -1.63
MSX1P28360 AP005660.1-201ENST00000522972 293 ntBASIC4.89□□□□□ -1.63
MSX1P28360 AL121603.1-201ENST00000553815 142 ntBASIC4.89□□□□□ -1.63
MSX1P28360 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC4.89□□□□□ -1.63
MSX1P28360 AC010632.3-201ENST00000611377 369 ntBASIC4.89□□□□□ -1.63
MSX1P28360 AC099506.2-201ENST00000623074 221 ntBASIC4.89□□□□□ -1.63
MSX1P28360 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSX1P28360 AC004817.4-201ENST00000602396 3625 ntBASIC4.89□□□□□ -1.63
MSX1P28360 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.89□□□□□ -1.63
MSX1P28360 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
MSX1P28360 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.89□□□□□ -1.63
MSX1P28360 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.88□□□□□ -1.63
MSX1P28360 AL022322.2-201ENST00000624072 20397 ntBASIC4.88□□□□□ -1.63
MSX1P28360 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.88□□□□□ -1.63
MSX1P28360 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSX1P28360 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.88□□□□□ -1.63
MSX1P28360 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSX1P28360 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSX1P28360 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
MSX1P28360 Y_RNA.272-201ENST00000364696 102 ntBASIC4.88□□□□□ -1.63
MSX1P28360 RNU6-1130P-201ENST00000365434 107 ntBASIC4.88□□□□□ -1.63
MSX1P28360 RNU6-1074P-201ENST00000383995 104 ntBASIC4.88□□□□□ -1.63
MSX1P28360 Y_RNA.446-201ENST00000384178 104 ntBASIC4.88□□□□□ -1.63
MSX1P28360 RNA5SP339-201ENST00000390987 122 ntBASIC4.88□□□□□ -1.63
MSX1P28360 RNU1-139P-201ENST00000391307 165 ntBASIC4.88□□□□□ -1.63
MSX1P28360 AC079809.1-201ENST00000415468 276 ntBASIC4.88□□□□□ -1.63
MSX1P28360 AC108075.1-201ENST00000424692 529 ntBASIC4.88□□□□□ -1.63
MSX1P28360 AL590762.4-201ENST00000425885 253 ntBASIC4.88□□□□□ -1.63
MSX1P28360 AC091390.3-201ENST00000426478 338 ntBASIC4.88□□□□□ -1.63
MSX1P28360 AC010265.1-201ENST00000513509 211 ntBASIC4.88□□□□□ -1.63
MSX1P28360 AC006427.1-201ENST00000514359 712 ntBASIC4.88□□□□□ -1.63
MSX1P28360 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.88□□□□□ -1.63
MSX1P28360 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.88□□□□□ -1.63
MSX1P28360 RNA5SP228-201ENST00000516232 133 ntBASIC4.88□□□□□ -1.63
MSX1P28360 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSX1P28360 MIR3691-201ENST00000578066 90 ntBASIC4.88□□□□□ -1.63
MSX1P28360 MIR4646-201ENST00000580775 63 ntBASIC4.88□□□□□ -1.63
MSX1P28360 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.88□□□□□ -1.63
MSX1P28360 AC008749.1-201ENST00000597650 306 ntBASIC4.88□□□□□ -1.63
MSX1P28360 AP000769.2-201ENST00000602344 396 ntBASIC4.88□□□□□ -1.63
MSX1P28360 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.88□□□□□ -1.63
MSX1P28360 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSX1P28360 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.88□□□□□ -1.63
MSX1P28360 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
MSX1P28360 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.88□□□□□ -1.63
MSX1P28360 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSX1P28360 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSX1P28360 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSX1P28360 AC023421.1-201ENST00000590535 1785 ntBASIC4.88□□□□□ -1.63
MSX1P28360 OR4G2P-202ENST00000641004 1759 ntBASIC4.88□□□□□ -1.63
MSX1P28360 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.88□□□□□ -1.63
MSX1P28360 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.88□□□□□ -1.63
MSX1P28360 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.88□□□□□ -1.63
MSX1P28360 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.88□□□□□ -1.63
MSX1P28360 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSX1P28360 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSX1P28360 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
MSX1P28360 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSX1P28360 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
MSX1P28360 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
MSX1P28360 AC009541.1-201ENST00000438279 2662 ntBASIC4.87□□□□□ -1.63
MSX1P28360 STX3-208ENST00000641815 3236 ntBASIC4.87□□□□□ -1.63
MSX1P28360 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
MSX1P28360 RNA5SP305-201ENST00000362665 119 ntBASIC4.87□□□□□ -1.63
MSX1P28360 Y_RNA.136-201ENST00000363444 102 ntBASIC4.87□□□□□ -1.63
MSX1P28360 SNORD115-32-201ENST00000364079 82 ntBASIC4.87□□□□□ -1.63
MSX1P28360 SNORA67-201ENST00000384423 137 ntBASIC4.87□□□□□ -1.63
MSX1P28360 Y_RNA.568-201ENST00000384742 113 ntBASIC4.87□□□□□ -1.63
MSX1P28360 RNA5SP213-201ENST00000391031 106 ntBASIC4.87□□□□□ -1.63
MSX1P28360 RNU6-131P-201ENST00000391144 107 ntBASIC4.87□□□□□ -1.63
MSX1P28360 SNORA40C-201ENST00000391285 128 ntBASIC4.87□□□□□ -1.63
MSX1P28360 GPS2P1-201ENST00000411761 986 ntBASIC4.87□□□□□ -1.63
MSX1P28360 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.87□□□□□ -1.63
MSX1P28360 AL390729.2-201ENST00000416137 156 ntBASIC4.87□□□□□ -1.63
MSX1P28360 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX1P28360 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX1P28360 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX1P28360 RPL7AP49-201ENST00000429522 581 ntBASIC4.87□□□□□ -1.63
MSX1P28360 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
MSX1P28360 AL591438.1-201ENST00000433508 581 ntBASIC4.87□□□□□ -1.63
MSX1P28360 AL162725.1-201ENST00000435405 301 ntBASIC4.87□□□□□ -1.63
MSX1P28360 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.87□□□□□ -1.63
MSX1P28360 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
MSX1P28360 AC117440.1-201ENST00000474107 571 ntBASIC4.87□□□□□ -1.63
MSX1P28360 RN7SKP66-201ENST00000516681 231 ntBASIC4.87□□□□□ -1.63
MSX1P28360 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.87□□□□□ -1.63
MSX1P28360 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.87□□□□□ -1.63
MSX1P28360 MIR4660-201ENST00000583549 74 ntBASIC4.87□□□□□ -1.63
MSX1P28360 Clostridiales-1.2-201ENST00000636724 160 ntBASIC4.87□□□□□ -1.63
MSX1P28360 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.87□□□□□ -1.63
MSX1P28360 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
MSX1P28360 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
MSX1P28360 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSX1P28360 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms