Protein–RNA interactions for Protein: Q9P1Z3

HCN3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3Q9P1Z3 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.34□□□□□ -1.87
HCN3Q9P1Z3 AC174048.1-201ENST00000603389 144 ntBASIC3.34□□□□□ -1.87
HCN3Q9P1Z3 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.34□□□□□ -1.87
HCN3Q9P1Z3 AC136601.2-201ENST00000604356 474 ntBASIC3.34□□□□□ -1.87
HCN3Q9P1Z3 AC122108.2-201ENST00000611946 526 ntBASIC3.34□□□□□ -1.87
HCN3Q9P1Z3 XIST_intron.1-201ENST00000619444 68 ntBASIC3.34□□□□□ -1.87
HCN3Q9P1Z3 AC012314.7-201ENST00000619693 93 ntBASIC3.34□□□□□ -1.87
HCN3Q9P1Z3 AC073308.1-201ENST00000623696 305 ntBASIC3.34□□□□□ -1.87
HCN3Q9P1Z3 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.34□□□□□ -1.87
HCN3Q9P1Z3 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC3.34□□□□□ -1.87
HCN3Q9P1Z3 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
HCN3Q9P1Z3 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.34□□□□□ -1.87
HCN3Q9P1Z3 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
HCN3Q9P1Z3 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
HCN3Q9P1Z3 API5P2-201ENST00000397055 1498 ntBASIC3.34□□□□□ -1.88
HCN3Q9P1Z3 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
HCN3Q9P1Z3 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 RNA5SP42-201ENST00000364278 115 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 RNU6-61P-201ENST00000365528 109 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 Y_RNA.516-201ENST00000384541 124 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 MIR591-201ENST00000385290 95 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 RNU6-192P-201ENST00000391253 100 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 MTCO3P40-201ENST00000392516 676 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 AC068050.1-201ENST00000394891 380 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 SNORA11.2-201ENST00000408318 127 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 RNA5SP111-201ENST00000411386 101 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 HMGB3P11-201ENST00000440127 604 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 PSPHP1-201ENST00000450062 261 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 HMGN2P13-201ENST00000476476 274 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 RPL32P34-201ENST00000486380 400 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 AC110768.1-201ENST00000509222 400 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 RNU6-123P-201ENST00000516163 102 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 AL359212.1-201ENST00000556608 614 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 AL670379.4-201ENST00000605279 254 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 AC012409.4-201ENST00000612923 249 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 AC139792.3-201ENST00000623525 224 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 SEPT14P19-203ENST00000633205 211 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 AL512643.1-201ENST00000635735 524 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 ZNF680P1-201ENST00000436625 1469 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 MTCO1P12-201ENST00000414273 1543 ntBASIC3.33□□□□□ -1.88
HCN3Q9P1Z3 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 RNU4-35P-201ENST00000362588 141 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 RNU4-48P-201ENST00000365559 182 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 Y_RNA.381-201ENST00000365666 102 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 RNU6-1035P-201ENST00000384477 107 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 MIR454-201ENST00000390180 115 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 U3.39-201ENST00000408569 239 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 RNU6-1077P-201ENST00000410506 102 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 USP9YP6-201ENST00000413550 854 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 AL109913.1-201ENST00000421173 514 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 ELOCP14-201ENST00000428070 331 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 ATP5JP1-201ENST00000431631 322 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 OR2B8P-201ENST00000432841 938 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 RPL36AP53-201ENST00000432891 316 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 ELOCP7-201ENST00000439968 331 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 RPL12P25-201ENST00000455592 494 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 RPS29P15-201ENST00000458329 171 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 RNU7-182P-201ENST00000459009 62 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 snoU13.28-201ENST00000459235 104 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 SRRM1P2-201ENST00000464531 1192 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 RPS15AP34-201ENST00000487776 387 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 RBBP4P6-201ENST00000508098 202 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 RNU6-579P-201ENST00000516879 102 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 RNU6-711P-201ENST00000517255 106 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 AP000867.2-201ENST00000532468 320 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 AC011602.1-201ENST00000546484 331 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 AC004805.2-201ENST00000605382 482 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 AC019176.2-201ENST00000611579 315 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 MIR8058-201ENST00000615737 89 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 AL359547.2-201ENST00000615810 418 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 AL157786.1-207ENST00000627771 695 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 Z99571.1-201ENST00000636677 394 ntBASIC3.32□□□□□ -1.88
HCN3Q9P1Z3 MTND5P17-201ENST00000418405 1603 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms