Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 OR9I1-203ENST00000641478 3027 ntAPPRIS P1 BASIC9.3□□□□□ -0.92
SENP3Q9H4L4 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC9.3□□□□□ -0.92
SENP3Q9H4L4 IKZF3-217ENST00000623724 9787 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
SENP3Q9H4L4 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC9.3□□□□□ -0.92
SENP3Q9H4L4 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 ARPP21-220ENST00000441454 2880 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 SNORA73.1-201ENST00000363107 205 ntBASIC9.29□□□□□ -0.92
SENP3Q9H4L4 KRTAP2-5P-201ENST00000446109 396 ntBASIC9.29□□□□□ -0.92
SENP3Q9H4L4 LSM3P4-201ENST00000502948 309 ntBASIC9.29□□□□□ -0.92
SENP3Q9H4L4 RNU6-581P-201ENST00000516214 105 ntBASIC9.29□□□□□ -0.92
SENP3Q9H4L4 AL513218.1-201ENST00000606527 391 ntBASIC9.29□□□□□ -0.92
SENP3Q9H4L4 MIR6811-201ENST00000620409 58 ntBASIC9.29□□□□□ -0.92
SENP3Q9H4L4 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 TMC3-AS1-206ENST00000612811 2726 ntBASIC9.29□□□□□ -0.92
SENP3Q9H4L4 SPATS2-222ENST00000552918 2993 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 KLHL32-207ENST00000620278 2642 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 SPATA31C1-201ENST00000420021 3895 ntBASIC9.29□□□□□ -0.92
SENP3Q9H4L4 ZNF438-208ENST00000538351 3284 ntAPPRIS ALT2 TSL 2 BASIC9.29□□□□□ -0.92
SENP3Q9H4L4 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC9.28□□□□□ -0.92
SENP3Q9H4L4 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
SENP3Q9H4L4 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
SENP3Q9H4L4 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC9.28□□□□□ -0.92
SENP3Q9H4L4 RNU4-15P-201ENST00000362613 141 ntBASIC9.28□□□□□ -0.92
SENP3Q9H4L4 MIR105-2-201ENST00000385083 81 ntBASIC9.28□□□□□ -0.92
SENP3Q9H4L4 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC9.28□□□□□ -0.92
SENP3Q9H4L4 ACA64.1-201ENST00000459171 127 ntBASIC9.28□□□□□ -0.92
SENP3Q9H4L4 RPL30P14-201ENST00000482744 348 ntBASIC9.28□□□□□ -0.92
SENP3Q9H4L4 SCARNA5-201ENST00000516201 276 ntBASIC9.28□□□□□ -0.92
SENP3Q9H4L4 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
SENP3Q9H4L4 AC011604.1-201ENST00000545978 196 ntBASIC9.28□□□□□ -0.92
SENP3Q9H4L4 TPRX1P1-201ENST00000557620 319 ntBASIC9.28□□□□□ -0.92
SENP3Q9H4L4 AC044860.2-201ENST00000561005 179 ntBASIC9.28□□□□□ -0.92
SENP3Q9H4L4 MIR3176-201ENST00000582210 90 ntBASIC9.28□□□□□ -0.92
SENP3Q9H4L4 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC9.28□□□□□ -0.92
SENP3Q9H4L4 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
SENP3Q9H4L4 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
SENP3Q9H4L4 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC9.28□□□□□ -0.92
SENP3Q9H4L4 TSHZ2-201ENST00000329613 3093 ntTSL 4 BASIC9.28□□□□□ -0.92
SENP3Q9H4L4 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC9.28□□□□□ -0.92
SENP3Q9H4L4 AL034546.1-201ENST00000623740 3693 ntBASIC9.27□□□□□ -0.92
SENP3Q9H4L4 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC9.27□□□□□ -0.92
SENP3Q9H4L4 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC9.27□□□□□ -0.92
SENP3Q9H4L4 E2F8-201ENST00000250024 3240 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 LINC01772-201ENST00000457898 3245 ntTSL 2 BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 IGKV2-18-201ENST00000522607 343 ntBASIC9.27□□□□□ -0.93
SENP3Q9H4L4 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 AC010547.6-201ENST00000571789 193 ntBASIC9.27□□□□□ -0.93
SENP3Q9H4L4 MIR6085-201ENST00000618314 110 ntBASIC9.27□□□□□ -0.93
SENP3Q9H4L4 AC011944.2-201ENST00000624440 683 ntBASIC9.27□□□□□ -0.93
SENP3Q9H4L4 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 CRB1-202ENST00000367399 3885 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC9.27□□□□□ -0.93
SENP3Q9H4L4 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC9.26□□□□□ -0.93
SENP3Q9H4L4 DLG2-209ENST00000418306 3027 ntTSL 2 BASIC9.26□□□□□ -0.93
SENP3Q9H4L4 GTF2IRD2P1-201ENST00000449689 2749 ntBASIC9.26□□□□□ -0.93
SENP3Q9H4L4 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC9.26□□□□□ -0.93
SENP3Q9H4L4 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
SENP3Q9H4L4 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
SENP3Q9H4L4 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC9.26□□□□□ -0.93
SENP3Q9H4L4 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
SENP3Q9H4L4 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC9.26□□□□□ -0.93
SENP3Q9H4L4 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC9.26□□□□□ -0.93
SENP3Q9H4L4 RNA5SP65-201ENST00000363166 119 ntBASIC9.26□□□□□ -0.93
SENP3Q9H4L4 RNU6-649P-201ENST00000384463 107 ntBASIC9.26□□□□□ -0.93
SENP3Q9H4L4 AL645608.4-201ENST00000423619 154 ntBASIC9.26□□□□□ -0.93
SENP3Q9H4L4 CKS1BP5-201ENST00000434172 273 ntBASIC9.26□□□□□ -0.93
SENP3Q9H4L4 RN7SL51P-201ENST00000468230 285 ntBASIC9.26□□□□□ -0.93
SENP3Q9H4L4 AC022206.1-201ENST00000495947 347 ntBASIC9.26□□□□□ -0.93
SENP3Q9H4L4 RNA5SP271-201ENST00000516700 88 ntBASIC9.26□□□□□ -0.93
SENP3Q9H4L4 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC9.26□□□□□ -0.93
SENP3Q9H4L4 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
SENP3Q9H4L4 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC9.26□□□□□ -0.93
SENP3Q9H4L4 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
SENP3Q9H4L4 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
SENP3Q9H4L4 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC9.25□□□□□ -0.93
SENP3Q9H4L4 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
SENP3Q9H4L4 AC005332.9-201ENST00000620266 2921 ntBASIC9.25□□□□□ -0.93
SENP3Q9H4L4 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
SENP3Q9H4L4 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms