Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AC073073.2-201ENST00000609827 2578 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 ZNF680P1-201ENST00000436625 1469 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AC090740.1-201ENST00000623193 2262 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 Y_RNA.372-201ENST00000365599 102 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 RNU6-946P-201ENST00000383878 107 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 Y_RNA.409-201ENST00000383990 98 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 RNU6-606P-201ENST00000384721 111 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 MIR493-201ENST00000385254 89 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 MIR454-201ENST00000390180 115 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AL590002.1-201ENST00000406554 418 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 RNA5SP120-201ENST00000410900 112 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 YPEL5P1-201ENST00000419731 367 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 USP9YP18-201ENST00000425912 695 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AC093106.2-201ENST00000428212 385 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 HMGB1P27-201ENST00000431429 603 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 MTATP6P13-201ENST00000438531 667 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 RPS15AP9-201ENST00000439856 381 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AC027673.1-201ENST00000456245 405 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AC013267.1-201ENST00000458227 267 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 ARL4AP2-201ENST00000507378 601 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 SNORA74D-201ENST00000516404 141 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 RNU6-1256P-201ENST00000516539 103 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AL512310.1-201ENST00000548639 172 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AC004024.1-201ENST00000549244 247 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 HMGB1P33-201ENST00000563485 527 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AC067852.3-201ENST00000589177 561 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 DPPA3P3-201ENST00000603842 430 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AP001330.5-201ENST00000607176 411 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AC008536.2-201ENST00000607284 349 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AC012531.5-201ENST00000611375 151 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AL365204.3-201ENST00000612448 685 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AC090132.2-201ENST00000615881 347 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AC092628.2-201ENST00000622492 339 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 MFSD8-233ENST00000641482 4860 ntBASIC3.17□□□□□ -1.9
BEST3Q8N1M1 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.17□□□□□ -1.9
BEST3Q8N1M1 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 Y_RNA.9-201ENST00000362354 101 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 RNU6-179P-201ENST00000363350 107 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 RNU4-48P-201ENST00000365559 182 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 Y_RNA.554-201ENST00000384672 102 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 U3.42-201ENST00000408746 214 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 RNU2-9P-201ENST00000410194 145 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 OR51A5P-201ENST00000415429 942 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AC114491.1-201ENST00000416095 246 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 SDCBPP3-201ENST00000419629 891 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AL353193.1-201ENST00000421444 268 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 ARF4P2-201ENST00000430209 526 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AC009237.8-201ENST00000445492 379 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 CBWD4P-201ENST00000445695 655 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 Z99127.3-201ENST00000448158 395 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AL356010.1-201ENST00000456364 102 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 RNU6-953P-201ENST00000459154 107 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AC087588.1-201ENST00000462203 316 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 RPS23P3-201ENST00000470993 430 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 RPS20P22-201ENST00000473700 357 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AL049830.2-201ENST00000480072 201 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 FCF1P8-201ENST00000510322 597 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 Y_RNA.693-201ENST00000516641 110 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 MTND4LP26-201ENST00000518144 282 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AP006245.1-201ENST00000522549 120 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 ATP5F1P5-201ENST00000526403 760 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 OR5BN1P-201ENST00000532955 829 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AC011602.1-201ENST00000546484 331 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 SYF2P1-201ENST00000550658 413 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 MIR3186-201ENST00000577404 85 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AC006557.5-201ENST00000603126 811 ntBASIC3.16□□□□□ -1.9
BEST3Q8N1M1 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.16□□□□□ -1.9
BEST3Q8N1M1 AC090517.2-201ENST00000614966 680 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms