Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 RNU6-6P-201ENST00000606623 107 ntBASIC5.59□□□□□ -1.51
SH3RF1Q7Z6J0 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC5.59□□□□□ -1.51
SH3RF1Q7Z6J0 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.59□□□□□ -1.51
SH3RF1Q7Z6J0 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SH3RF1Q7Z6J0 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SH3RF1Q7Z6J0 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.59□□□□□ -1.51
SH3RF1Q7Z6J0 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
SH3RF1Q7Z6J0 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC5.59□□□□□ -1.52
SH3RF1Q7Z6J0 GVINP1-202ENST00000531871 7271 ntBASIC5.59□□□□□ -1.52
SH3RF1Q7Z6J0 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 RNU4-90P-201ENST00000362773 141 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 RNU6-827P-201ENST00000365553 106 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 RNU6-395P-201ENST00000365662 106 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 SNORA22C-201ENST00000384614 134 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 RNU6-959P-201ENST00000384671 107 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 SNORA12.2-201ENST00000391040 156 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 SNORA53-201ENST00000391141 249 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 MIR298-201ENST00000401212 88 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 Y_RNA.629-201ENST00000411368 105 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 TOMM20P4-201ENST00000427861 435 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 AL592045.1-201ENST00000429867 352 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 RN7SL517P-201ENST00000462240 305 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 AC091021.1-201ENST00000468051 388 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 MRPL42P6-201ENST00000486397 371 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 HMGB3P16-201ENST00000508037 287 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 RN7SKP276-201ENST00000516242 268 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 IGHVII-62-1-201ENST00000519283 235 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 MIR1273C-201ENST00000578669 77 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 AC037487.3-201ENST00000606668 112 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 FTO-223ENST00000640179 210 ntTSL 5 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 AL451142.2-201ENST00000429076 2090 ntBASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.58□□□□□ -1.52
SH3RF1Q7Z6J0 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 UBE2L2-201ENST00000254302 429 ntBASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 Y_RNA.76-201ENST00000362931 109 ntBASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 SNORA73.1-201ENST00000363107 205 ntBASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 SNORD78.2-201ENST00000391076 69 ntBASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 AL079342.1-201ENST00000401460 267 ntBASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 RN7SL817P-201ENST00000480777 288 ntBASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 AC022493.1-201ENST00000492984 337 ntBASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 RNU7-175P-201ENST00000515915 61 ntBASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 RNU6-496P-201ENST00000516145 99 ntBASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 AC022790.1-201ENST00000522872 204 ntBASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 AC008489.1-201ENST00000524271 483 ntBASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 TRAV37-201ENST00000553906 342 ntBASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 AL157871.3-201ENST00000557231 293 ntBASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 DHX9P1-201ENST00000436565 3076 ntBASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SH3RF1Q7Z6J0 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 RNU6-76P-201ENST00000384060 104 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 RNU6-937P-201ENST00000384325 106 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 SNORA70.10-201ENST00000384515 134 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 MIR23A-201ENST00000385245 73 ntBASIC5.56□□□□□ -1.52
SH3RF1Q7Z6J0 AC017079.2-201ENST00000416102 485 ntBASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms