Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.41■□□□□ 0.86
SIX4Q9UIU6 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 CCR12P-201ENST00000446203 998 ntBASIC20.4■□□□□ 0.86
SIX4Q9UIU6 TSPY17P-201ENST00000450329 467 ntBASIC20.4■□□□□ 0.86
SIX4Q9UIU6 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SIX4Q9UIU6 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.39■□□□□ 0.86
SIX4Q9UIU6 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.39■□□□□ 0.86
SIX4Q9UIU6 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SIX4Q9UIU6 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SIX4Q9UIU6 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SIX4Q9UIU6 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.39■□□□□ 0.86
SIX4Q9UIU6 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SIX4Q9UIU6 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SIX4Q9UIU6 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SIX4Q9UIU6 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.39■□□□□ 0.86
SIX4Q9UIU6 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SIX4Q9UIU6 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 KRT8P3-201ENST00000519669 1449 ntBASIC20.39■□□□□ 0.85
SIX4Q9UIU6 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 AP003041.3-201ENST00000527151 707 ntBASIC20.39■□□□□ 0.85
SIX4Q9UIU6 MIR4674-201ENST00000582457 87 ntBASIC20.39■□□□□ 0.85
SIX4Q9UIU6 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.39■□□□□ 0.85
SIX4Q9UIU6 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.39■□□□□ 0.85
SIX4Q9UIU6 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SIX4Q9UIU6 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SIX4Q9UIU6 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.38■□□□□ 0.85
SIX4Q9UIU6 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SIX4Q9UIU6 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SIX4Q9UIU6 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SIX4Q9UIU6 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.38■□□□□ 0.85
SIX4Q9UIU6 SLC25A3P1-201ENST00000443844 931 ntBASIC20.38■□□□□ 0.85
SIX4Q9UIU6 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.38■□□□□ 0.85
SIX4Q9UIU6 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
SIX4Q9UIU6 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.38■□□□□ 0.85
SIX4Q9UIU6 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SIX4Q9UIU6 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SIX4Q9UIU6 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SIX4Q9UIU6 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SIX4Q9UIU6 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX4Q9UIU6 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SIX4Q9UIU6 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX4Q9UIU6 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
SIX4Q9UIU6 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX4Q9UIU6 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SIX4Q9UIU6 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SIX4Q9UIU6 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.37■□□□□ 0.85
SIX4Q9UIU6 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms