Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC16.81■□□□□ 0.28
MMP28Q9H239 RAP2CP1-201ENST00000605103 478 ntBASIC16.81■□□□□ 0.28
MMP28Q9H239 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC16.81■□□□□ 0.28
MMP28Q9H239 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC16.81■□□□□ 0.28
MMP28Q9H239 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
MMP28Q9H239 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MMP28Q9H239 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC16.81■□□□□ 0.28
MMP28Q9H239 Z98044.1-201ENST00000632503 1764 ntBASIC16.81■□□□□ 0.28
MMP28Q9H239 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
MMP28Q9H239 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MMP28Q9H239 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MMP28Q9H239 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MMP28Q9H239 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MMP28Q9H239 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MMP28Q9H239 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC16.8■□□□□ 0.28
MMP28Q9H239 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
MMP28Q9H239 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MMP28Q9H239 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MMP28Q9H239 AC007322.3-201ENST00000426526 701 ntBASIC16.8■□□□□ 0.28
MMP28Q9H239 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MMP28Q9H239 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MMP28Q9H239 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MMP28Q9H239 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
MMP28Q9H239 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MMP28Q9H239 AC124067.4-201ENST00000519691 2379 ntBASIC16.8■□□□□ 0.28
MMP28Q9H239 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC16.8■□□□□ 0.28
MMP28Q9H239 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MMP28Q9H239 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
MMP28Q9H239 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
MMP28Q9H239 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MMP28Q9H239 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.8■□□□□ 0.28
MMP28Q9H239 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MMP28Q9H239 KRT8P36-201ENST00000489121 1440 ntBASIC16.79■□□□□ 0.28
MMP28Q9H239 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC16.79■□□□□ 0.28
MMP28Q9H239 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
MMP28Q9H239 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.79■□□□□ 0.28
MMP28Q9H239 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 METTL26-203ENST00000397664 604 ntTSL 2 BASIC16.79■□□□□ 0.28
MMP28Q9H239 UQCRFS1P1-201ENST00000435169 820 ntBASIC16.79■□□□□ 0.28
MMP28Q9H239 AC026185.1-201ENST00000445748 174 ntBASIC16.79■□□□□ 0.28
MMP28Q9H239 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC16.79■□□□□ 0.28
MMP28Q9H239 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC16.79■□□□□ 0.28
MMP28Q9H239 DUX4L16-201ENST00000555130 1264 ntBASIC16.79■□□□□ 0.28
MMP28Q9H239 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC16.79■□□□□ 0.28
MMP28Q9H239 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 AL591742.1-201ENST00000604433 565 ntBASIC16.79■□□□□ 0.28
MMP28Q9H239 MDK-213ENST00000617138 635 ntTSL 2 BASIC16.79■□□□□ 0.28
MMP28Q9H239 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC16.79■□□□□ 0.28
MMP28Q9H239 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC16.79■□□□□ 0.28
MMP28Q9H239 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.79■□□□□ 0.28
MMP28Q9H239 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.79■□□□□ 0.28
MMP28Q9H239 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MMP28Q9H239 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.78■□□□□ 0.28
MMP28Q9H239 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.78■□□□□ 0.28
MMP28Q9H239 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
MMP28Q9H239 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
MMP28Q9H239 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC16.78■□□□□ 0.28
MMP28Q9H239 AC231657.2-201ENST00000624556 255 ntBASIC16.78■□□□□ 0.28
MMP28Q9H239 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.78■□□□□ 0.28
MMP28Q9H239 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
MMP28Q9H239 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
MMP28Q9H239 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MMP28Q9H239 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.77■□□□□ 0.28
MMP28Q9H239 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MMP28Q9H239 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC16.77■□□□□ 0.28
MMP28Q9H239 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MMP28Q9H239 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.77■□□□□ 0.28
MMP28Q9H239 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms