Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC23.83■■□□□ 1.41
USP44Q9H0E7 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
USP44Q9H0E7 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
USP44Q9H0E7 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC23.83■■□□□ 1.41
USP44Q9H0E7 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
USP44Q9H0E7 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
USP44Q9H0E7 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
USP44Q9H0E7 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC23.83■■□□□ 1.41
USP44Q9H0E7 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
USP44Q9H0E7 P4HB-223ENST00000576390 439 ntTSL 4 BASIC23.83■■□□□ 1.41
USP44Q9H0E7 AC010653.2-201ENST00000623505 997 ntBASIC23.83■■□□□ 1.41
USP44Q9H0E7 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC23.83■■□□□ 1.41
USP44Q9H0E7 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.4
USP44Q9H0E7 KRT8P3-201ENST00000519669 1449 ntBASIC23.83■■□□□ 1.4
USP44Q9H0E7 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
USP44Q9H0E7 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
USP44Q9H0E7 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC23.83■■□□□ 1.4
USP44Q9H0E7 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC23.83■■□□□ 1.4
USP44Q9H0E7 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP44Q9H0E7 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC23.82■■□□□ 1.4
USP44Q9H0E7 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC23.82■■□□□ 1.4
USP44Q9H0E7 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
USP44Q9H0E7 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP44Q9H0E7 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC23.82■■□□□ 1.4
USP44Q9H0E7 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
USP44Q9H0E7 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP44Q9H0E7 SLC25A3P1-201ENST00000443844 931 ntBASIC23.82■■□□□ 1.4
USP44Q9H0E7 AC128688.1-201ENST00000487626 519 ntBASIC23.82■■□□□ 1.4
USP44Q9H0E7 PPOX-219ENST00000544598 813 ntTSL 2 BASIC23.82■■□□□ 1.4
USP44Q9H0E7 MIR4674-201ENST00000582457 87 ntBASIC23.82■■□□□ 1.4
USP44Q9H0E7 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP44Q9H0E7 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP44Q9H0E7 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP44Q9H0E7 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC23.82■■□□□ 1.4
USP44Q9H0E7 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
USP44Q9H0E7 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
USP44Q9H0E7 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC23.82■■□□□ 1.4
USP44Q9H0E7 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
USP44Q9H0E7 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
USP44Q9H0E7 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC23.81■■□□□ 1.4
USP44Q9H0E7 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP44Q9H0E7 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USP44Q9H0E7 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP44Q9H0E7 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP44Q9H0E7 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC23.81■■□□□ 1.4
USP44Q9H0E7 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP44Q9H0E7 RCN1P1-201ENST00000400413 996 ntBASIC23.81■■□□□ 1.4
USP44Q9H0E7 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC23.81■■□□□ 1.4
USP44Q9H0E7 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
USP44Q9H0E7 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USP44Q9H0E7 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USP44Q9H0E7 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP44Q9H0E7 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC23.81■■□□□ 1.4
USP44Q9H0E7 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP44Q9H0E7 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP44Q9H0E7 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP44Q9H0E7 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP44Q9H0E7 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP44Q9H0E7 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP44Q9H0E7 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC23.8■■□□□ 1.4
USP44Q9H0E7 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC23.8■■□□□ 1.4
USP44Q9H0E7 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC23.8■■□□□ 1.4
USP44Q9H0E7 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC23.8■■□□□ 1.4
USP44Q9H0E7 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
USP44Q9H0E7 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC23.8■■□□□ 1.4
USP44Q9H0E7 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP44Q9H0E7 AC010203.1-204ENST00000548782 407 ntBASIC23.8■■□□□ 1.4
USP44Q9H0E7 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP44Q9H0E7 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC23.8■■□□□ 1.4
USP44Q9H0E7 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP44Q9H0E7 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC23.8■■□□□ 1.4
USP44Q9H0E7 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP44Q9H0E7 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP44Q9H0E7 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP44Q9H0E7 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP44Q9H0E7 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC23.79■■□□□ 1.4
USP44Q9H0E7 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP44Q9H0E7 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
USP44Q9H0E7 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP44Q9H0E7 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP44Q9H0E7 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP44Q9H0E7 BUB3-202ENST00000368859 667 ntTSL 3 BASIC23.79■■□□□ 1.4
USP44Q9H0E7 AC005521.1-201ENST00000393351 872 ntBASIC23.79■■□□□ 1.4
USP44Q9H0E7 AC113347.1-201ENST00000413321 391 ntBASIC23.79■■□□□ 1.4
USP44Q9H0E7 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC23.79■■□□□ 1.4
USP44Q9H0E7 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP44Q9H0E7 AC005363.2-201ENST00000618631 242 ntBASIC23.79■■□□□ 1.4
USP44Q9H0E7 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
USP44Q9H0E7 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
USP44Q9H0E7 CLN6-221ENST00000637494 765 ntTSL 5 BASIC23.79■■□□□ 1.4
USP44Q9H0E7 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP44Q9H0E7 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP44Q9H0E7 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP44Q9H0E7 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC23.79■■□□□ 1.4
USP44Q9H0E7 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP44Q9H0E7 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC23.79■■□□□ 1.4
USP44Q9H0E7 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP44Q9H0E7 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC23.78■■□□□ 1.4
USP44Q9H0E7 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP44Q9H0E7 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms