Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
IFT140Q96RY7 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC31.66■■■□□ 2.66
IFT140Q96RY7 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC31.66■■■□□ 2.66
IFT140Q96RY7 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
IFT140Q96RY7 GGCT-205ENST00000409436 954 ntTSL 3 BASIC31.66■■■□□ 2.66
IFT140Q96RY7 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC31.66■■■□□ 2.66
IFT140Q96RY7 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC31.66■■■□□ 2.66
IFT140Q96RY7 TERC-201ENST00000602385 541 ntBASIC31.66■■■□□ 2.66
IFT140Q96RY7 LINC02084-201ENST00000606069 1096 ntBASIC31.66■■■□□ 2.66
IFT140Q96RY7 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC31.66■■■□□ 2.66
IFT140Q96RY7 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC31.66■■■□□ 2.66
IFT140Q96RY7 AC104417.2-201ENST00000562989 1793 ntBASIC31.66■■■□□ 2.66
IFT140Q96RY7 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC31.66■■■□□ 2.66
IFT140Q96RY7 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC31.66■■■□□ 2.66
IFT140Q96RY7 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
IFT140Q96RY7 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC31.65■■■□□ 2.66
IFT140Q96RY7 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC31.65■■■□□ 2.66
IFT140Q96RY7 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
IFT140Q96RY7 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC31.65■■■□□ 2.66
IFT140Q96RY7 KRT18P23-201ENST00000435622 1283 ntBASIC31.65■■■□□ 2.66
IFT140Q96RY7 RN7SL606P-201ENST00000472779 293 ntBASIC31.65■■■□□ 2.66
IFT140Q96RY7 AC091607.1-201ENST00000490318 1060 ntBASIC31.65■■■□□ 2.66
IFT140Q96RY7 PGAM5P1-201ENST00000518923 814 ntBASIC31.65■■■□□ 2.66
IFT140Q96RY7 TEN1-204ENST00000588202 862 ntTSL 3 BASIC31.65■■■□□ 2.66
IFT140Q96RY7 IGHV3-41-201ENST00000613121 348 ntBASIC31.65■■■□□ 2.66
IFT140Q96RY7 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC31.65■■■□□ 2.66
IFT140Q96RY7 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC31.65■■■□□ 2.66
IFT140Q96RY7 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
IFT140Q96RY7 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC31.65■■■□□ 2.66
IFT140Q96RY7 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
IFT140Q96RY7 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
IFT140Q96RY7 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC31.65■■■□□ 2.66
IFT140Q96RY7 PIN1-206ENST00000587625 878 ntTSL 2 BASIC31.65■■■□□ 2.66
IFT140Q96RY7 AC010240.3-201ENST00000607688 395 ntBASIC31.65■■■□□ 2.66
IFT140Q96RY7 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
IFT140Q96RY7 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC31.64■■■□□ 2.66
IFT140Q96RY7 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
IFT140Q96RY7 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC31.64■■■□□ 2.66
IFT140Q96RY7 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
IFT140Q96RY7 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
IFT140Q96RY7 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
IFT140Q96RY7 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
IFT140Q96RY7 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
IFT140Q96RY7 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC31.64■■■□□ 2.66
IFT140Q96RY7 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
IFT140Q96RY7 AF186996.4-201ENST00000467186 377 ntBASIC31.64■■■□□ 2.66
IFT140Q96RY7 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC31.64■■■□□ 2.66
IFT140Q96RY7 AC073648.2-201ENST00000510116 352 ntBASIC31.64■■■□□ 2.66
IFT140Q96RY7 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
IFT140Q96RY7 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
IFT140Q96RY7 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
IFT140Q96RY7 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC31.63■■■□□ 2.65
IFT140Q96RY7 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC31.63■■■□□ 2.65
IFT140Q96RY7 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC31.63■■■□□ 2.65
IFT140Q96RY7 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC31.63■■■□□ 2.65
IFT140Q96RY7 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
IFT140Q96RY7 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC31.63■■■□□ 2.65
IFT140Q96RY7 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC31.63■■■□□ 2.65
IFT140Q96RY7 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC31.63■■■□□ 2.65
IFT140Q96RY7 AC009237.14-201ENST00000609975 1594 ntBASIC31.62■■■□□ 2.65
IFT140Q96RY7 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
IFT140Q96RY7 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC31.62■■■□□ 2.65
IFT140Q96RY7 PMS2P2-201ENST00000425039 1128 ntBASIC31.62■■■□□ 2.65
IFT140Q96RY7 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC31.62■■■□□ 2.65
IFT140Q96RY7 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC31.62■■■□□ 2.65
IFT140Q96RY7 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
IFT140Q96RY7 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC31.62■■■□□ 2.65
IFT140Q96RY7 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
IFT140Q96RY7 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC31.62■■■□□ 2.65
IFT140Q96RY7 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC31.61■■■□□ 2.65
IFT140Q96RY7 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
IFT140Q96RY7 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC31.61■■■□□ 2.65
IFT140Q96RY7 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC31.61■■■□□ 2.65
IFT140Q96RY7 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
IFT140Q96RY7 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
IFT140Q96RY7 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
IFT140Q96RY7 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC31.61■■■□□ 2.65
IFT140Q96RY7 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC31.61■■■□□ 2.65
IFT140Q96RY7 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC31.61■■■□□ 2.65
IFT140Q96RY7 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC31.61■■■□□ 2.65
IFT140Q96RY7 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC31.61■■■□□ 2.65
IFT140Q96RY7 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
IFT140Q96RY7 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC31.61■■■□□ 2.65
IFT140Q96RY7 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
IFT140Q96RY7 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC31.6■■■□□ 2.65
IFT140Q96RY7 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
IFT140Q96RY7 AC009065.1-201ENST00000564055 1225 ntBASIC31.6■■■□□ 2.65
IFT140Q96RY7 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
IFT140Q96RY7 AL049840.3-201ENST00000602669 611 ntBASIC31.6■■■□□ 2.65
IFT140Q96RY7 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
IFT140Q96RY7 AL691403.2-201ENST00000618460 490 ntBASIC31.6■■■□□ 2.65
IFT140Q96RY7 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
IFT140Q96RY7 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC31.6■■■□□ 2.65
IFT140Q96RY7 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC31.6■■■□□ 2.65
IFT140Q96RY7 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
IFT140Q96RY7 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC31.6■■■□□ 2.65
IFT140Q96RY7 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
IFT140Q96RY7 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
IFT140Q96RY7 IGHGP-201ENST00000390555 1178 ntBASIC31.59■■■□□ 2.65
IFT140Q96RY7 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms