Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 AL160286.2-201ENST00000567150 934 ntBASIC18.88■□□□□ 0.61
VPS13AQ96RL7 AC148477.8-201ENST00000624298 468 ntBASIC18.88■□□□□ 0.61
VPS13AQ96RL7 AC112907.3-201ENST00000577781 2400 ntBASIC18.88■□□□□ 0.61
VPS13AQ96RL7 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS13AQ96RL7 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS13AQ96RL7 AC098831.1-202ENST00000438821 336 ntBASIC18.85■□□□□ 0.61
VPS13AQ96RL7 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 AC007225.1-201ENST00000566331 1836 ntBASIC18.85■□□□□ 0.61
VPS13AQ96RL7 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 AC010327.4-202ENST00000591484 748 ntBASIC18.85■□□□□ 0.61
VPS13AQ96RL7 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 AC074051.2-201ENST00000565115 352 ntBASIC18.85■□□□□ 0.61
VPS13AQ96RL7 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS13AQ96RL7 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.84■□□□□ 0.61
VPS13AQ96RL7 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS13AQ96RL7 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms