Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
LMX1AQ8TE12 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.58■□□□□ 0.57
LMX1AQ8TE12 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LMX1AQ8TE12 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LMX1AQ8TE12 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.58■□□□□ 0.56
LMX1AQ8TE12 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 CR769767.2-201ENST00000622735 460 ntBASIC18.58■□□□□ 0.56
LMX1AQ8TE12 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
LMX1AQ8TE12 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 IER3-202ENST00000376377 1350 ntBASIC18.57■□□□□ 0.56
LMX1AQ8TE12 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 CLDN5-201ENST00000403084 2357 ntBASIC18.57■□□□□ 0.56
LMX1AQ8TE12 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.57■□□□□ 0.56
LMX1AQ8TE12 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 AC112907.2-201ENST00000448639 330 ntBASIC18.56■□□□□ 0.56
LMX1AQ8TE12 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
LMX1AQ8TE12 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.55■□□□□ 0.56
LMX1AQ8TE12 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1AQ8TE12 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms