Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
USP38Q8NB14 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
USP38Q8NB14 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.3■■□□□ 1
USP38Q8NB14 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC21.3■■□□□ 1
USP38Q8NB14 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
USP38Q8NB14 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.3■■□□□ 1
USP38Q8NB14 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.3■■□□□ 1
USP38Q8NB14 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.3■■□□□ 1
USP38Q8NB14 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC21.3■■□□□ 1
USP38Q8NB14 Z85996.1-201ENST00000494644 937 ntBASIC21.3■■□□□ 1
USP38Q8NB14 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.3■■□□□ 1
USP38Q8NB14 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.3■■□□□ 1
USP38Q8NB14 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.3■■□□□ 1
USP38Q8NB14 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.3■■□□□ 1
USP38Q8NB14 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.3■■□□□ 1
USP38Q8NB14 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.3■■□□□ 1
USP38Q8NB14 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.3■■□□□ 1
USP38Q8NB14 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USP38Q8NB14 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
USP38Q8NB14 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.3■■□□□ 1
USP38Q8NB14 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.3■■□□□ 1
USP38Q8NB14 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.3■■□□□ 1
USP38Q8NB14 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USP38Q8NB14 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
USP38Q8NB14 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC21.29■■□□□ 1
USP38Q8NB14 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
USP38Q8NB14 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
USP38Q8NB14 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.29■■□□□ 1
USP38Q8NB14 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.29■■□□□ 1
USP38Q8NB14 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
USP38Q8NB14 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.29■■□□□ 1
USP38Q8NB14 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
USP38Q8NB14 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.29■■□□□ 1
USP38Q8NB14 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.29■■□□□ 1
USP38Q8NB14 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
USP38Q8NB14 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.29■■□□□ 1
USP38Q8NB14 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.29■■□□□ 1
USP38Q8NB14 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.29■■□□□ 1
USP38Q8NB14 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
USP38Q8NB14 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.29■■□□□ 1
USP38Q8NB14 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.29■■□□□ 1
USP38Q8NB14 AC010653.2-201ENST00000623505 997 ntBASIC21.29■■□□□ 1
USP38Q8NB14 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
USP38Q8NB14 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.29■■□□□ 1
USP38Q8NB14 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
USP38Q8NB14 AC018445.3-201ENST00000624177 1945 ntBASIC21.29■■□□□ 1
USP38Q8NB14 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
USP38Q8NB14 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
USP38Q8NB14 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.29■■□□□ 1
USP38Q8NB14 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
USP38Q8NB14 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP38Q8NB14 AL020996.1-203ENST00000536896 2307 ntBASIC21.28■■□□□ 1
USP38Q8NB14 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.28■■□□□ 1
USP38Q8NB14 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.28■■□□□ 1
USP38Q8NB14 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
USP38Q8NB14 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.28■■□□□ 1
USP38Q8NB14 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC21.28■■□□□ 1
USP38Q8NB14 AL160286.2-201ENST00000567150 934 ntBASIC21.28■■□□□ 1
USP38Q8NB14 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
USP38Q8NB14 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.28■■□□□ 1
USP38Q8NB14 AL121956.5-201ENST00000625261 221 ntBASIC21.28■■□□□ 1
USP38Q8NB14 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
USP38Q8NB14 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP38Q8NB14 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.28■■□□□ 1
USP38Q8NB14 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP38Q8NB14 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.28■■□□□ 1
USP38Q8NB14 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.28■■□□□ 1
USP38Q8NB14 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP38Q8NB14 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
USP38Q8NB14 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
USP38Q8NB14 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.27■■□□□ 1
USP38Q8NB14 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP38Q8NB14 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.27■■□□□ 1
USP38Q8NB14 AP000593.1-201ENST00000393668 712 ntBASIC21.27■■□□□ 1
USP38Q8NB14 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC21.27■■□□□ 1
USP38Q8NB14 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
USP38Q8NB14 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC21.27■■□□□ 1
USP38Q8NB14 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.27■■□□□ 1
USP38Q8NB14 BX323043.1-201ENST00000641006 1765 ntBASIC21.27■■□□□ 1
USP38Q8NB14 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP38Q8NB14 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.27■■□□□ 1
USP38Q8NB14 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP38Q8NB14 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.27■□□□□ 0.99
USP38Q8NB14 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC21.27■□□□□ 0.99
USP38Q8NB14 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.27■□□□□ 0.99
USP38Q8NB14 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.26■□□□□ 0.99
USP38Q8NB14 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.26■□□□□ 0.99
USP38Q8NB14 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP38Q8NB14 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP38Q8NB14 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP38Q8NB14 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP38Q8NB14 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.26■□□□□ 0.99
USP38Q8NB14 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP38Q8NB14 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC21.26■□□□□ 0.99
USP38Q8NB14 YBX1P2-201ENST00000489612 999 ntBASIC21.26■□□□□ 0.99
USP38Q8NB14 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
USP38Q8NB14 AC023511.2-201ENST00000618803 211 ntBASIC21.26■□□□□ 0.99
USP38Q8NB14 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP38Q8NB14 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP38Q8NB14 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms