Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 AC091390.4-202ENST00000476426 537 ntBASIC23.03■■□□□ 1.28
VPS53Q5VIR6 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
VPS53Q5VIR6 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
VPS53Q5VIR6 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
VPS53Q5VIR6 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
VPS53Q5VIR6 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
VPS53Q5VIR6 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC23.02■■□□□ 1.28
VPS53Q5VIR6 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC23.02■■□□□ 1.28
VPS53Q5VIR6 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
VPS53Q5VIR6 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
VPS53Q5VIR6 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
VPS53Q5VIR6 AC116562.2-201ENST00000507042 360 ntBASIC23.02■■□□□ 1.28
VPS53Q5VIR6 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC23.02■■□□□ 1.28
VPS53Q5VIR6 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC23.02■■□□□ 1.28
VPS53Q5VIR6 MIR6786-201ENST00000616843 113 ntBASIC23.02■■□□□ 1.28
VPS53Q5VIR6 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC23.02■■□□□ 1.28
VPS53Q5VIR6 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
VPS53Q5VIR6 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
VPS53Q5VIR6 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC23.02■■□□□ 1.28
VPS53Q5VIR6 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
VPS53Q5VIR6 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 AL355075.4-201ENST00000554988 638 ntBASIC23.01■■□□□ 1.27
VPS53Q5VIR6 AC026271.3-201ENST00000571884 352 ntBASIC23.01■■□□□ 1.27
VPS53Q5VIR6 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC23.01■■□□□ 1.27
VPS53Q5VIR6 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC23■■□□□ 1.27
VPS53Q5VIR6 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC23■■□□□ 1.27
VPS53Q5VIR6 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC23■■□□□ 1.27
VPS53Q5VIR6 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
VPS53Q5VIR6 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
VPS53Q5VIR6 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC23■■□□□ 1.27
VPS53Q5VIR6 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
VPS53Q5VIR6 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
VPS53Q5VIR6 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC23■■□□□ 1.27
VPS53Q5VIR6 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
VPS53Q5VIR6 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC23■■□□□ 1.27
VPS53Q5VIR6 AL355355.2-201ENST00000442321 338 ntBASIC23■■□□□ 1.27
VPS53Q5VIR6 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC23■■□□□ 1.27
VPS53Q5VIR6 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC23■■□□□ 1.27
VPS53Q5VIR6 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
VPS53Q5VIR6 AC130371.2-201ENST00000619443 611 ntBASIC23■■□□□ 1.27
VPS53Q5VIR6 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC23■■□□□ 1.27
VPS53Q5VIR6 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
VPS53Q5VIR6 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC23■■□□□ 1.27
VPS53Q5VIR6 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
VPS53Q5VIR6 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
VPS53Q5VIR6 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
VPS53Q5VIR6 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
VPS53Q5VIR6 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
VPS53Q5VIR6 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
VPS53Q5VIR6 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
VPS53Q5VIR6 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
VPS53Q5VIR6 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC22.99■■□□□ 1.27
VPS53Q5VIR6 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC22.99■■□□□ 1.27
VPS53Q5VIR6 DHDH-203ENST00000522614 776 ntTSL 5 BASIC22.99■■□□□ 1.27
VPS53Q5VIR6 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC22.99■■□□□ 1.27
VPS53Q5VIR6 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC22.99■■□□□ 1.27
VPS53Q5VIR6 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC22.99■■□□□ 1.27
VPS53Q5VIR6 AC011298.2-201ENST00000617989 482 ntBASIC22.99■■□□□ 1.27
VPS53Q5VIR6 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC22.99■■□□□ 1.27
VPS53Q5VIR6 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
VPS53Q5VIR6 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
VPS53Q5VIR6 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
VPS53Q5VIR6 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms