Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A3Q01955 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.45■□□□□ 0.7
COL4A3Q01955 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A3Q01955 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.45■□□□□ 0.7
COL4A3Q01955 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.45■□□□□ 0.7
COL4A3Q01955 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A3Q01955 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.45■□□□□ 0.7
COL4A3Q01955 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.45■□□□□ 0.7
COL4A3Q01955 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.45■□□□□ 0.7
COL4A3Q01955 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A3Q01955 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.45■□□□□ 0.7
COL4A3Q01955 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A3Q01955 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A3Q01955 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
COL4A3Q01955 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.45■□□□□ 0.7
COL4A3Q01955 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A3Q01955 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A3Q01955 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.45■□□□□ 0.7
COL4A3Q01955 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.45■□□□□ 0.7
COL4A3Q01955 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL4A3Q01955 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3Q01955 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3Q01955 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3Q01955 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3Q01955 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3Q01955 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.44■□□□□ 0.7
COL4A3Q01955 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3Q01955 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.44■□□□□ 0.7
COL4A3Q01955 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.44■□□□□ 0.7
COL4A3Q01955 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3Q01955 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3Q01955 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3Q01955 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3Q01955 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3Q01955 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
COL4A3Q01955 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.44■□□□□ 0.7
COL4A3Q01955 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3Q01955 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3Q01955 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3Q01955 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A3Q01955 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3Q01955 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
COL4A3Q01955 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A3Q01955 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.43■□□□□ 0.7
COL4A3Q01955 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
COL4A3Q01955 AC079602.3-201ENST00000623931 403 ntBASIC19.43■□□□□ 0.7
COL4A3Q01955 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.43■□□□□ 0.7
COL4A3Q01955 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3Q01955 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A3Q01955 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
COL4A3Q01955 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.43■□□□□ 0.7
COL4A3Q01955 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3Q01955 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3Q01955 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A3Q01955 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL4A3Q01955 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.43■□□□□ 0.7
COL4A3Q01955 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.43■□□□□ 0.7
COL4A3Q01955 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3Q01955 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL4A3Q01955 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3Q01955 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3Q01955 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3Q01955 KRT17P6-201ENST00000453795 1220 ntBASIC19.43■□□□□ 0.7
COL4A3Q01955 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3Q01955 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.43■□□□□ 0.7
COL4A3Q01955 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.43■□□□□ 0.7
COL4A3Q01955 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.43■□□□□ 0.7
COL4A3Q01955 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3Q01955 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A3Q01955 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3Q01955 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
COL4A3Q01955 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3Q01955 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3Q01955 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.42■□□□□ 0.7
COL4A3Q01955 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3Q01955 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3Q01955 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.42■□□□□ 0.7
COL4A3Q01955 LINC01006-201ENST00000333319 2292 ntBASIC19.42■□□□□ 0.7
COL4A3Q01955 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3Q01955 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.42■□□□□ 0.7
COL4A3Q01955 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3Q01955 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.42■□□□□ 0.7
COL4A3Q01955 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.42■□□□□ 0.7
COL4A3Q01955 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
COL4A3Q01955 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.42■□□□□ 0.7
COL4A3Q01955 AP002414.4-201ENST00000589764 1148 ntBASIC19.42■□□□□ 0.7
COL4A3Q01955 AC004263.2-201ENST00000617183 678 ntBASIC19.42■□□□□ 0.7
COL4A3Q01955 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3Q01955 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3Q01955 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3Q01955 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3Q01955 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3Q01955 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
COL4A3Q01955 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
COL4A3Q01955 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A3Q01955 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A3Q01955 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A3Q01955 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A3Q01955 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL4A3Q01955 AC004870.1-201ENST00000315132 882 ntBASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms