Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HSPG2P98160 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC11.84□□□□□ -0.51
HSPG2P98160 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC11.84□□□□□ -0.51
HSPG2P98160 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HSPG2P98160 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
HSPG2P98160 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC11.84□□□□□ -0.51
HSPG2P98160 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
HSPG2P98160 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
HSPG2P98160 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HSPG2P98160 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HSPG2P98160 RPS15-207ENST00000591032 550 ntTSL 3 BASIC11.84□□□□□ -0.51
HSPG2P98160 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC11.84□□□□□ -0.51
HSPG2P98160 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
HSPG2P98160 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HSPG2P98160 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HSPG2P98160 HTR5BP-201ENST00000430851 1154 ntBASIC11.83□□□□□ -0.51
HSPG2P98160 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC11.83□□□□□ -0.51
HSPG2P98160 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC11.83□□□□□ -0.51
HSPG2P98160 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC11.83□□□□□ -0.51
HSPG2P98160 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
HSPG2P98160 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
HSPG2P98160 AC233702.3-201ENST00000578656 1387 ntBASIC11.83□□□□□ -0.52
HSPG2P98160 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC11.83□□□□□ -0.52
HSPG2P98160 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC11.83□□□□□ -0.52
HSPG2P98160 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC11.83□□□□□ -0.52
HSPG2P98160 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC11.83□□□□□ -0.52
HSPG2P98160 AP006288.1-201ENST00000446065 395 ntBASIC11.83□□□□□ -0.52
HSPG2P98160 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC11.83□□□□□ -0.52
HSPG2P98160 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC11.83□□□□□ -0.52
HSPG2P98160 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
HSPG2P98160 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC11.83□□□□□ -0.52
HSPG2P98160 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
HSPG2P98160 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC11.83□□□□□ -0.52
HSPG2P98160 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC11.83□□□□□ -0.52
HSPG2P98160 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC11.83□□□□□ -0.52
HSPG2P98160 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC11.83□□□□□ -0.52
HSPG2P98160 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 FP700111.2-201ENST00000619190 1892 ntBASIC11.83□□□□□ -0.52
HSPG2P98160 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 AC244107.1-201ENST00000442033 332 ntBASIC11.83□□□□□ -0.52
HSPG2P98160 LHX6-205ENST00000464484 666 ntTSL 2 BASIC11.83□□□□□ -0.52
HSPG2P98160 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC11.83□□□□□ -0.52
HSPG2P98160 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC11.83□□□□□ -0.52
HSPG2P98160 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC11.83□□□□□ -0.52
HSPG2P98160 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC11.83□□□□□ -0.52
HSPG2P98160 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HSPG2P98160 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC11.83□□□□□ -0.52
HSPG2P98160 SMG8-203ENST00000578922 2178 ntBASIC11.82□□□□□ -0.52
HSPG2P98160 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC11.82□□□□□ -0.52
HSPG2P98160 IMP4-203ENST00000409935 958 ntTSL 5 BASIC11.82□□□□□ -0.52
HSPG2P98160 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 AC004967.1-201ENST00000453589 447 ntBASIC11.82□□□□□ -0.52
HSPG2P98160 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
HSPG2P98160 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC11.82□□□□□ -0.52
HSPG2P98160 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
HSPG2P98160 IGHV3-41-201ENST00000613121 348 ntBASIC11.82□□□□□ -0.52
HSPG2P98160 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
HSPG2P98160 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC11.82□□□□□ -0.52
HSPG2P98160 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC11.82□□□□□ -0.52
HSPG2P98160 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
HSPG2P98160 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 AL023284.2-201ENST00000405850 579 ntBASIC11.82□□□□□ -0.52
HSPG2P98160 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC11.82□□□□□ -0.52
HSPG2P98160 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC11.82□□□□□ -0.52
HSPG2P98160 PRR29-209ENST00000582540 967 ntTSL 2 BASIC11.82□□□□□ -0.52
HSPG2P98160 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC11.82□□□□□ -0.52
HSPG2P98160 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC11.82□□□□□ -0.52
HSPG2P98160 WBP2-203ENST00000433525 928 ntTSL 2 BASIC11.82□□□□□ -0.52
HSPG2P98160 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HSPG2P98160 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC11.81□□□□□ -0.52
HSPG2P98160 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HSPG2P98160 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms