Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SUMO3P55854 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SUMO3P55854 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SUMO3P55854 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.3■□□□□ 0.36
SUMO3P55854 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.3■□□□□ 0.36
SUMO3P55854 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.3■□□□□ 0.36
SUMO3P55854 AC097488.1-201ENST00000507834 756 ntBASIC17.3■□□□□ 0.36
SUMO3P55854 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SUMO3P55854 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SUMO3P55854 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.3■□□□□ 0.36
SUMO3P55854 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SUMO3P55854 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.3■□□□□ 0.36
SUMO3P55854 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.3■□□□□ 0.36
SUMO3P55854 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SUMO3P55854 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SUMO3P55854 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SUMO3P55854 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SUMO3P55854 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SUMO3P55854 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SUMO3P55854 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SUMO3P55854 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SUMO3P55854 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SUMO3P55854 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SUMO3P55854 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SUMO3P55854 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SUMO3P55854 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SUMO3P55854 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SUMO3P55854 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SUMO3P55854 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SUMO3P55854 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.29■□□□□ 0.36
SUMO3P55854 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SUMO3P55854 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SUMO3P55854 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SUMO3P55854 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.29■□□□□ 0.36
SUMO3P55854 MFAP1P1-201ENST00000442257 1255 ntBASIC17.29■□□□□ 0.36
SUMO3P55854 RBM17P1-201ENST00000453646 1190 ntBASIC17.29■□□□□ 0.36
SUMO3P55854 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.29■□□□□ 0.36
SUMO3P55854 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.29■□□□□ 0.36
SUMO3P55854 SLC25A1P4-201ENST00000567977 778 ntBASIC17.29■□□□□ 0.36
SUMO3P55854 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.29■□□□□ 0.36
SUMO3P55854 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SUMO3P55854 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.29■□□□□ 0.36
SUMO3P55854 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.29■□□□□ 0.36
SUMO3P55854 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.29■□□□□ 0.36
SUMO3P55854 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.29■□□□□ 0.36
SUMO3P55854 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SUMO3P55854 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SUMO3P55854 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SUMO3P55854 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SUMO3P55854 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SUMO3P55854 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.28■□□□□ 0.36
SUMO3P55854 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
SUMO3P55854 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SUMO3P55854 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.28■□□□□ 0.36
SUMO3P55854 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SUMO3P55854 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SUMO3P55854 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SUMO3P55854 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SUMO3P55854 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SUMO3P55854 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
SUMO3P55854 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.28■□□□□ 0.36
SUMO3P55854 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
SUMO3P55854 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.28■□□□□ 0.36
SUMO3P55854 CA15P1-201ENST00000481698 905 ntBASIC17.28■□□□□ 0.36
SUMO3P55854 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.28■□□□□ 0.36
SUMO3P55854 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
SUMO3P55854 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
SUMO3P55854 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SUMO3P55854 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.28■□□□□ 0.36
SUMO3P55854 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SUMO3P55854 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
SUMO3P55854 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.28■□□□□ 0.36
SUMO3P55854 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SUMO3P55854 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SUMO3P55854 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SUMO3P55854 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SUMO3P55854 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SUMO3P55854 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SUMO3P55854 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.27■□□□□ 0.36
SUMO3P55854 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
SUMO3P55854 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SUMO3P55854 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SUMO3P55854 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.27■□□□□ 0.36
SUMO3P55854 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SUMO3P55854 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
SUMO3P55854 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SUMO3P55854 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SUMO3P55854 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SUMO3P55854 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SUMO3P55854 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.27■□□□□ 0.36
SUMO3P55854 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SUMO3P55854 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SUMO3P55854 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
SUMO3P55854 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SUMO3P55854 KRT8P3-201ENST00000519669 1449 ntBASIC17.27■□□□□ 0.35
SUMO3P55854 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SUMO3P55854 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SUMO3P55854 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.27■□□□□ 0.35
SUMO3P55854 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SUMO3P55854 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms