Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
LIM2P55344 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIM2P55344 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
LIM2P55344 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
LIM2P55344 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIM2P55344 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LIM2P55344 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
LIM2P55344 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
LIM2P55344 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
LIM2P55344 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIM2P55344 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
LIM2P55344 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIM2P55344 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIM2P55344 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIM2P55344 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIM2P55344 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIM2P55344 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIM2P55344 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.11■□□□□ 0.49
LIM2P55344 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.11■□□□□ 0.49
LIM2P55344 TSPY21P-201ENST00000433481 731 ntBASIC18.11■□□□□ 0.49
LIM2P55344 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.11■□□□□ 0.49
LIM2P55344 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.11■□□□□ 0.49
LIM2P55344 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.11■□□□□ 0.49
LIM2P55344 MIR4497-201ENST00000583208 89 ntBASIC18.11■□□□□ 0.49
LIM2P55344 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.11■□□□□ 0.49
LIM2P55344 MIR4785-201ENST00000585005 73 ntBASIC18.11■□□□□ 0.49
LIM2P55344 REXO1L10P-201ENST00000615707 1290 ntBASIC18.11■□□□□ 0.49
LIM2P55344 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.11■□□□□ 0.49
LIM2P55344 REXO1L12P-201ENST00000622156 912 ntBASIC18.11■□□□□ 0.49
LIM2P55344 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.11■□□□□ 0.49
LIM2P55344 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.11■□□□□ 0.49
LIM2P55344 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIM2P55344 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.11■□□□□ 0.49
LIM2P55344 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.11■□□□□ 0.49
LIM2P55344 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIM2P55344 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIM2P55344 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.11■□□□□ 0.49
LIM2P55344 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIM2P55344 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIM2P55344 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.11■□□□□ 0.49
LIM2P55344 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIM2P55344 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.11■□□□□ 0.49
LIM2P55344 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIM2P55344 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
LIM2P55344 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIM2P55344 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.1■□□□□ 0.49
LIM2P55344 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
LIM2P55344 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.1■□□□□ 0.49
LIM2P55344 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
LIM2P55344 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.1■□□□□ 0.49
LIM2P55344 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.1■□□□□ 0.49
LIM2P55344 AP003071.4-201ENST00000562276 1284 ntBASIC18.1■□□□□ 0.49
LIM2P55344 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.1■□□□□ 0.49
LIM2P55344 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
LIM2P55344 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
LIM2P55344 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.1■□□□□ 0.49
LIM2P55344 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.1■□□□□ 0.49
LIM2P55344 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.1■□□□□ 0.49
LIM2P55344 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIM2P55344 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.09■□□□□ 0.49
LIM2P55344 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.09■□□□□ 0.49
LIM2P55344 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
LIM2P55344 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.09■□□□□ 0.49
LIM2P55344 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
LIM2P55344 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIM2P55344 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.09■□□□□ 0.49
LIM2P55344 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIM2P55344 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
LIM2P55344 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
LIM2P55344 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIM2P55344 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIM2P55344 TSPY23P-201ENST00000440136 739 ntBASIC18.09■□□□□ 0.49
LIM2P55344 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.09■□□□□ 0.49
LIM2P55344 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
LIM2P55344 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
LIM2P55344 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIM2P55344 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIM2P55344 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIM2P55344 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.09■□□□□ 0.49
LIM2P55344 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
LIM2P55344 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIM2P55344 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
LIM2P55344 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.09■□□□□ 0.49
LIM2P55344 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms